Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003924.1 Hibiscus syriacus cultivar Beakdansim tig00008483_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1466330

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 520 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1402025--1402097
24
3.0
24
75
0
83
20
10
15
53
1.71
1402004--1402097
48
2.0
48
82
4
118
21
13
14
50
1.78
1404155--1404201
13
3.6
13
82
0
58
17
44
19
19
1.87
1404201--1404246
15
3.2
14
90
6
58
15
30
26
28
1.96
1404204--1404246
7
6.1
7
80
20
54
13
30
25
30
1.94
1404212--1404257
15
2.9
15
90
6
65
13
28
28
30
1.94
1405556--1405591
18
2.0
18
88
0
54
52
0
16
30
1.44
1406733--1406829
48
2.0
48
86
4
133
21
14
14
49
1.79
1406756--1406825
12
5.8
12
70
12
54
17
14
15
52
1.74
1406757--1406829
24
3.0
24
72
7
76
19
12
15
53
1.72
1406988--1407012
2
12.5
2
100
0
50
48
0
0
52
1.00
1422696--1422732
13
2.8
13
91
0
65
16
48
21
13
1.80
1422694--1422758
31
2.1
31
88
0
94
15
47
20
16
1.82
1422758--1422786
15
1.9
15
100
0
58
13
20
27
37
1.91
1425278--1425350
24
3.0
24
75
0
83
20
12
15
52
1.74
1425277--1425346
12
5.8
12
75
6
61
18
14
15
51
1.77
1427368--1427408
17
2.4
16
84
11
55
19
48
19
12
1.80
1427434--1427468
7
4.7
7
89
10
52
14
28
25
31
1.95
1427434--1427479
15
2.9
15
90
6
65
13
28
28
30
1.94
1430294--1430619
163
2.0
163
96
2
611
29
9
21
40
1.84
1437468--1437511
7
6.4
7
81
5
54
29
27
25
18
1.98
1437468--1437511
21
2.2
20
91
4
70
29
27
25
18
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1437508--1437554
5
9.8
5
79
9
53
6
21
51
21
1.70
1437509--1437537
14
2.1
14
100
0
58
6
20
51
20
1.70
1437508--1437556
19
2.6
19
96
0
89
8
20
51
20
1.73
1437514--1437556
14
3.1
14
86
6
52
9
20
48
20
1.77
1437551--1437595
18
2.4
19
88
3
65
33
24
26
15
1.95
1444703--1444727
13
1.9
13
100
0
50
32
28
24
16
1.96
1444729--1444771
19
2.3
19
83
0
59
6
23
48
20
1.73
1444784--1444858
29
2.5
31
80
8
93
32
28
24
16
1.96
1444759--1444857
9
10.3
9
73
12
81
31
28
25
15
1.95
1444759--1444857
19
5.2
18
77
11
81
31
28
25
15
1.95
1444893--1445499
303
2.0
303
92
0
1000
29
22
25
22
1.99
1447841--1447928
4
20.2
4
73
15
59
25
40
28
5
1.78
1447855--1447976
9
13.3
9
72
19
83
22
37
31
8
1.83
1447842--1447976
22
6.1
22
77
8
105
22
38
31
7
1.82
1447841--1447965
13
9.8
13
72
19
77
24
38
30
7
1.82
1447990--1448036
19
2.5
19
85
0
58
21
40
27
10
1.86
1447990--1448042
19
2.8
19
77
11
54
22
39
28
9
1.85
1456294--1456336
19
2.2
19
83
8
50
34
6
2
55
1.39

Tables:   1   2   3   4   5

The End!