genome.fa.s393.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000393.1 Hibiscus syriacus cultivar Beakdansim tig00000721_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  145374

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3686--3716	16	1.9	16	100	0	62	45	12	25	16	1.83
5938--6038	51	2.0	51	94	0	175	35	12	19	31	1.90
9015--9181	54	3.0	55	84	9	182	29	18	30	21	1.97
17022--17621	210	2.9	210	89	2	895	39	16	10	33	1.84
17785--17850	32	2.1	33	85	5	91	16	13	30	39	1.87
25279--25325	15	3.1	15	74	17	51	51	0	2	46	1.13
25769--25815	13	3.7	12	86	13	51	25	2	0	72	0.96
27229--27268	20	1.9	20	85	10	53	20	10	10	60	1.57
30333--30358	2	13.0	2	100	0	52	50	0	0	50	1.00
30652--30691	13	3.2	13	89	3	55	82	0	17	0	0.67
35126--35263	54	2.6	54	80	4	170	41	14	22	21	1.89
35638--35692	22	2.5	22	87	0	83	34	14	14	36	1.87
36108--36840	112	6.5	112	89	0	932	38	13	19	29	1.89
38750--38775	2	13.0	2	100	0	52	50	0	0	50	1.00
38917--38963	15	3.1	15	74	17	51	51	0	2	46	1.13
42600--42795	96	2.0	96	87	0	275	36	18	25	20	1.95
50025--50064	21	1.9	21	85	10	55	35	10	2	52	1.48
51999--52087	45	2.0	46	82	6	110	29	17	24	28	1.98
52107--52144	20	1.9	20	88	0	58	21	13	31	34	1.91
52755--52798	12	3.8	12	78	6	54	36	20	18	25	1.95
52767--52820	11	4.8	11	77	4	54	31	18	18	31	1.95
52749--52809	23	2.7	23	94	0	104	32	19	19	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64341--64441	48	2.2	46	89	3	157	39	13	31	14	1.86
64886--64914	12	2.4	12	100	0	58	65	0	0	34	0.93
66741--66825	10	9.3	9	70	19	52	21	7	2	69	1.24
66760--66805	22	2.1	22	84	8	58	19	13	2	65	1.37
66741--66830	18	4.9	18	72	15	60	22	6	2	68	1.24
68015--68092	36	2.2	36	100	0	156	35	23	16	24	1.95
71765--71891	29	4.3	29	72	7	103	30	11	14	42	1.82
90717--90750	17	1.9	18	88	5	52	38	8	17	35	1.81
90837--90935	21	5.0	21	80	10	111	24	22	27	26	2.00
92261--93314	187	5.6	185	83	5	1138	43	8	15	32	1.77
92252--93304	373	2.8	371	83	3	1279	42	8	15	32	1.77
93874--93909	18	2.0	18	100	0	72	55	5	16	22	1.62
94577--94610	13	2.6	13	95	0	59	29	26	26	17	1.98
96144--96347	99	2.1	99	81	8	236	36	15	11	35	1.84
97027--97055	11	2.5	12	88	11	51	51	10	20	17	1.74
99063--99250	99	1.9	98	81	5	227	38	14	11	35	1.82
99188--99729	100	5.4	98	69	10	290	38	11	11	38	1.79
99188--99529	101	3.4	98	75	9	271	38	11	11	38	1.79
99095--99767	202	3.4	202	77	5	517	39	12	11	36	1.79
104505--104562	6	9.7	6	75	7	55	75	0	6	17	1.01
104453--104530	40	1.9	41	84	7	106	67	2	11	17	1.32
104433--104555	36	3.3	34	74	21	104	70	1	9	17	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104534--104578	22	2.0	22	83	8	56	80	0	4	15	0.87
104433--104586	76	2.0	77	80	10	174	72	1	9	16	1.18
104674--104725	24	2.1	23	86	10	68	75	3	1	19	1.06
104780--104829	16	3.4	15	73	21	52	82	0	4	14	0.82
104784--104829	21	2.2	21	88	7	67	82	0	4	13	0.81
104780--104853	28	2.6	28	82	6	87	78	0	6	14	0.95
105983--106196	67	3.2	66	79	5	223	36	10	20	31	1.87
106153--106277	31	3.9	31	85	12	173	35	9	17	37	1.83
106153--106277	65	2.0	62	86	10	173	35	9	17	37	1.83
106285--106355	37	1.9	37	94	0	124	39	14	22	23	1.91
106365--106533	66	2.6	65	80	3	187	39	10	17	31	1.84
106487--106574	37	2.4	37	84	0	113	40	14	19	25	1.89
106419--106637	103	2.1	103	91	1	361	37	12	18	31	1.88
106609--106658	21	2.4	21	93	0	82	36	10	28	26	1.88
106784--106886	52	2.0	52	94	0	179	37	14	17	30	1.90
108057--108410	183	1.9	183	93	1	602	29	21	21	27	1.98
111519--111547	7	4.3	7	95	4	51	55	0	0	44	0.99
111964--112040	40	1.9	40	86	5	111	68	1	11	18	1.26
112130--112168	2	19.5	2	100	0	78	51	0	0	48	1.00
112190--112244	24	2.4	23	82	14	69	76	3	1	18	1.02
112302--112345	20	2.2	20	88	8	63	84	0	4	11	0.77
112298--112370	27	2.6	26	81	16	76	78	0	6	15	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115800--115861	31	2.0	32	90	3	99	69	0	19	11	1.18
123899--123942	21	2.1	21	100	0	88	22	31	25	20	1.98
124720--125077	31	11.5	31	90	1	547	40	22	16	20	1.91
129039--129083	21	2.1	21	88	8	65	26	26	22	24	2.00
129847--130207	31	11.6	31	90	0	515	40	21	16	21	1.91
132215--132246	16	2.0	16	93	0	55	25	21	12	40	1.88
132734--132774	21	2.0	21	95	0	73	24	26	24	24	2.00
133594--133953	31	11.6	31	94	0	605	40	21	18	19	1.92
141556--141677	24	5.1	24	88	4	156	21	17	21	40	1.92
143684--143987	98	3.1	99	72	12	255	39	11	12	35	1.80
143711--144568	203	4.3	199	79	4	746	37	14	12	35	1.84
143692--144568	100	8.7	100	71	6	511	37	14	12	35	1.84
143721--144455	101	7.3	97	69	13	335	37	14	12	35	1.84
143711--144568	403	2.1	401	78	3	893	37	14	12	35	1.84

Tables:   1

The End!