genome.fa.s3940.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003940.1 Hibiscus syriacus cultivar Beakdansim tig00008513_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  168851

Tables:   1   2   

This is table  1  of  2  ( 142 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7922--7993	3	23.3	3	83	10	92	36	2	0	61	1.11
12110--12148	21	2.0	20	85	10	53	41	12	20	25	1.88
16042--16440	102	3.9	99	82	4	395	34	16	9	39	1.82
16039--16542	103	4.9	98	78	8	440	34	16	10	38	1.83
16459--16646	36	5.5	35	65	20	112	29	18	13	38	1.89
16495--16606	30	3.5	30	69	15	98	30	18	13	37	1.89
16441--16642	66	3.0	66	91	1	332	30	18	13	37	1.90
16641--17013	139	2.7	139	84	0	487	30	28	16	24	1.97
16641--17056	139	3.0	138	82	2	476	30	28	16	25	1.96
18764--18793	16	1.9	16	93	6	53	23	13	3	60	1.48
20741--20783	2	22.0	2	81	13	54	46	0	4	48	1.22
25914--26041	64	2.0	64	96	0	238	46	7	5	40	1.54
26110--26157	19	2.5	19	100	0	96	54	0	0	45	0.99
28060--28095	4	9.0	4	87	0	54	69	0	2	27	1.02
29354--29430	33	2.3	33	84	10	111	44	6	5	44	1.52
29372--29446	33	2.3	33	86	8	102	42	8	8	41	1.63
29451--29538	35	2.4	37	83	3	108	45	5	3	45	1.44
29301--29538	36	6.8	35	71	16	129	44	6	4	44	1.50
29496--29630	37	3.7	38	76	9	120	45	5	6	42	1.55
30303--30817	165	3.1	165	88	5	738	23	21	25	29	1.99
30303--30825	85	6.3	85	85	6	648	23	21	26	29	1.99
30322--30825	250	2.0	249	87	2	735	23	21	26	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31016--32016	106	9.5	106	94	0	1648	23	18	24	32	1.97
35898--35933	4	9.0	4	87	0	54	69	0	2	27	1.02
37062--37116	26	2.2	25	84	15	69	80	5	1	12	0.97
37191--37277	33	2.6	33	76	8	104	47	6	5	40	1.54
37138--37425	37	8.1	36	70	16	115	45	6	4	43	1.51
37393--37449	26	2.3	25	84	6	71	47	7	3	42	1.47
39460--39498	17	2.3	17	95	0	69	15	28	28	28	1.96
40462--40507	5	9.2	5	95	0	83	80	2	0	17	0.81
40820--41045	89	2.5	87	80	10	251	59	9	12	18	1.60
40791--41041	59	4.2	59	77	10	203	59	9	13	17	1.59
40806--41041	30	7.9	27	72	18	132	59	8	12	18	1.58
41844--41924	42	1.9	42	80	9	94	7	12	12	67	1.40
42608--42667	3	19.3	3	89	6	93	63	0	0	36	0.95
44393--44457	3	22.0	3	87	9	98	32	1	0	66	1.01
48294--48345	12	4.2	12	85	9	77	25	13	7	53	1.65
48295--48345	26	2.0	26	96	0	93	23	13	7	54	1.65
51124--51155	15	2.1	16	94	5	57	65	18	9	6	1.42
51150--51183	13	2.6	13	90	0	50	91	2	5	0	0.51
51150--51196	17	2.8	16	90	6	67	87	2	10	0	0.63
51152--51197	6	8.0	6	81	13	53	84	2	13	0	0.71
51164--51197	11	3.0	11	86	4	50	85	0	14	0	0.60
53267--53718	114	4.0	114	97	0	841	35	15	17	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56704--57114	113	3.7	112	83	10	520	37	13	19	28	1.90
57063--57159	40	2.6	38	90	6	153	49	10	20	19	1.77
56952--57272	149	2.1	147	87	6	448	39	14	19	26	1.90
57100--57723	112	5.6	111	87	4	803	37	13	18	30	1.89
56725--57491	374	2.0	376	89	2	1168	37	14	19	29	1.91
58069--58145	3	26.0	3	84	7	95	35	1	1	62	1.12
62013--62235	43	5.2	42	85	4	295	33	21	23	21	1.97
62011--62235	85	2.6	86	86	4	312	33	21	23	21	1.97
64680--64874	43	4.6	43	82	5	209	27	18	17	36	1.93
70751--70775	6	4.2	6	100	0	50	36	0	0	64	0.94
73384--73459	12	5.8	13	73	15	68	76	3	17	2	1.06
73384--73441	13	4.7	13	83	10	61	77	3	15	3	1.04
73384--73435	12	4.2	12	83	11	70	78	1	17	1	0.93
75091--75169	36	2.2	36	81	6	88	30	17	12	39	1.87
75109--75188	36	2.2	36	90	2	124	32	18	12	36	1.89
75128--75298	68	2.5	67	79	11	211	30	19	12	37	1.89
75128--75319	68	2.8	66	76	11	201	30	19	12	38	1.88
82370--82467	39	2.5	39	100	0	196	19	26	14	39	1.90
82634--83004	139	2.7	139	90	2	602	25	20	18	36	1.94
97383--97424	17	2.5	17	92	0	66	33	11	19	35	1.88
98415--98449	8	4.2	8	88	3	52	71	25	2	0	1.00
98816--98852	18	2.1	18	94	0	65	48	21	8	21	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102814--102855	17	2.5	17	92	0	66	33	11	19	35	1.88
103846--103882	8	4.5	8	86	6	56	72	24	2	0	0.97
104246--104282	18	2.1	18	94	0	65	48	21	8	21	1.76
108241--108282	17	2.5	17	92	0	66	33	11	19	35	1.88
109674--109710	18	2.1	18	94	0	65	48	21	8	21	1.76
118375--118434	27	2.2	27	96	0	111	30	23	20	26	1.98
122757--122797	17	2.4	17	87	0	55	17	17	9	56	1.67
123341--123398	20	2.9	21	79	10	75	27	20	18	32	1.97
131392--131431	21	1.9	21	85	10	55	35	10	2	52	1.48
142670--142704	18	1.9	18	88	11	54	20	8	2	68	1.29
144890--144929	18	2.2	19	86	13	57	27	2	7	62	1.35
146373--146414	22	2.0	22	85	4	59	33	4	9	52	1.55
148231--148295	21	3.1	21	77	4	78	26	27	24	21	1.99
148231--148310	41	2.0	41	87	0	115	28	25	25	21	1.99
148239--148310	20	3.5	20	81	3	81	30	22	26	20	1.98
148348--148390	22	1.9	23	86	13	63	20	20	30	27	1.98
148334--148432	21	4.8	20	79	13	101	22	19	34	24	1.96
148512--148569	30	2.0	29	90	10	91	44	15	5	34	1.69
148512--148571	29	2.0	30	93	6	104	43	15	6	35	1.72
149837--149884	19	2.5	20	82	3	62	29	12	6	52	1.63
151097--151144	21	2.3	21	96	0	87	27	27	20	25	1.99
151191--151261	20	3.5	20	80	3	79	29	22	26	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151286--151446	21	7.7	21	84	2	198	24	19	34	21	1.96
151286--151446	42	3.8	42	88	1	225	24	19	34	21	1.96
151526--151583	30	2.0	29	83	16	75	44	18	3	32	1.67
151526--151585	29	2.0	30	87	12	88	43	18	5	33	1.72
152854--152901	19	2.5	20	82	3	62	29	12	6	52	1.63
154113--154160	21	2.3	21	92	0	78	25	27	22	25	2.00
154207--154277	20	3.5	20	76	3	70	28	21	28	22	1.99
154199--154277	41	1.9	41	87	5	115	26	22	27	22	1.99
154315--154358	22	2.0	23	90	4	72	22	20	31	25	1.98
154344--154462	21	5.7	21	93	0	202	26	19	34	20	1.96
154309--154462	63	2.4	61	86	12	213	25	20	33	20	1.97
154309--154462	42	3.7	42	88	1	202	25	20	33	20	1.97
154542--154599	30	2.0	29	83	16	75	44	18	3	32	1.67
154542--154600	29	2.0	30	87	12	86	44	18	3	33	1.67
155047--155098	26	2.0	26	85	3	70	36	11	7	44	1.70
155869--155916	19	2.5	20	82	3	62	29	12	6	52	1.63
156775--156844	34	2.1	33	84	10	90	25	25	17	31	1.97
157126--157173	21	2.3	21	92	0	78	25	27	22	25	2.00
157220--157290	20	3.5	20	76	3	70	28	21	28	22	1.99
157212--157290	41	1.9	41	87	5	115	26	22	27	22	1.99
157328--157371	22	2.0	23	90	4	72	22	20	31	25	1.98
157357--157474	21	5.7	21	91	1	193	26	19	33	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
157322--157474	63	2.4	61	85	11	211	25	20	32	21	1.97
157322--157474	42	3.7	42	86	2	193	25	20	32	21	1.97
157543--157611	29	2.3	30	80	14	72	46	17	2	33	1.63
157554--157612	29	2.0	30	87	12	86	44	18	1	35	1.60
157554--157612	30	2.0	28	84	15	75	44	18	1	35	1.60
158879--158926	19	2.5	20	82	3	62	29	12	6	52	1.63
160138--160185	21	2.3	21	92	0	78	25	27	22	25	2.00
160232--160302	20	3.5	20	76	3	70	28	21	28	22	1.99
160224--160302	41	1.9	41	87	5	115	26	22	27	22	1.99
160340--160383	22	2.0	23	90	4	72	22	20	31	25	1.98

Tables:   1   2