genome.fa.s3949.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003949.1 Hibiscus syriacus cultivar Beakdansim tig00008537_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  268680

Tables:   1   2   

This is table  2  of  2  ( 208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
195102--195153	19	2.5	22	81	9	65	36	13	19	30	1.90
195050--195244	94	2.1	94	81	3	223	38	13	21	27	1.90
195590--195759	55	3.1	55	92	0	279	34	11	19	34	1.88
197383--197418	2	18.5	2	94	5	65	50	0	0	50	1.00
199033--199081	19	2.6	19	96	0	89	40	20	0	38	1.53
199676--199713	20	1.9	20	88	0	58	63	0	2	34	1.09
202752--202820	29	2.4	27	79	11	75	11	8	2	76	1.11
202776--202836	31	2.0	32	83	6	81	13	13	0	73	1.09
203718--203744	4	6.8	4	100	0	54	74	0	0	25	0.83
208854--209802	165	5.8	165	93	0	1504	28	22	20	27	1.99
211136--211180	2	22.5	2	100	0	90	48	0	0	51	1.00
212588--212622	17	2.1	16	89	5	52	28	0	0	71	0.86
212686--212747	19	3.3	19	78	15	58	37	1	0	61	1.06
213212--213271	31	1.9	31	93	0	102	41	8	8	41	1.65
219028--219088	26	2.4	25	91	5	104	55	1	8	34	1.39
219029--219088	23	2.3	26	81	13	63	56	1	6	35	1.35
219370--219417	25	2.0	25	87	4	71	52	2	4	41	1.32
219623--219667	21	2.1	21	91	0	72	22	22	17	37	1.94
220261--220326	19	3.4	20	85	6	91	13	18	19	48	1.81
221986--222031	21	2.2	21	88	0	65	23	15	28	32	1.95
222052--222093	21	2.0	21	81	9	50	19	4	38	38	1.73
222415--222512	21	4.7	21	75	6	101	21	32	19	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
222415--222532	41	2.8	42	83	2	139	20	33	19	26	1.96
222419--222532	21	5.5	20	71	10	77	20	34	20	25	1.96
224257--224292	18	2.0	18	94	0	63	19	2	22	55	1.56
226662--226707	24	1.9	24	95	0	83	32	21	21	23	1.98
227443--227481	15	2.5	15	83	4	51	66	0	5	28	1.12
227650--227771	61	2.0	60	87	4	174	31	13	22	31	1.92
227658--227859	20	10.0	20	74	8	119	29	14	22	33	1.94
227825--227887	21	3.0	21	83	2	74	36	17	22	23	1.95
230990--231027	3	13.0	3	83	5	51	60	0	2	36	1.11
233196--233470	103	2.6	103	75	13	254	49	16	2	30	1.60
233789--233841	25	2.1	25	89	0	79	33	22	15	28	1.94
235743--235794	20	2.6	20	96	0	95	38	26	13	21	1.90
235869--236042	20	8.6	20	83	5	217	34	26	19	19	1.96
235850--236040	60	3.2	60	83	0	247	35	25	19	19	1.95
236424--236494	33	2.2	33	92	0	115	11	22	18	47	1.80
236615--236669	14	3.6	14	73	21	56	41	23	25	9	1.83
236615--236685	33	2.2	33	94	0	124	43	25	22	8	1.81
236681--236778	19	5.7	19	70	22	81	10	24	22	42	1.84
236703--236792	14	5.7	14	74	23	81	8	25	23	42	1.83
236686--236800	33	3.5	33	95	0	212	9	24	20	45	1.81
238499--238970	185	2.6	185	99	0	926	22	12	18	46	1.83
238499--238970	93	5.1	93	98	1	912	22	12	18	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
239014--239142	19	7.3	19	75	17	125	45	28	17	8	1.77
239050--239142	33	2.8	32	91	4	150	46	27	18	7	1.76
239014--239142	52	2.5	52	74	14	140	45	28	17	8	1.77
239138--239272	19	7.6	19	75	16	128	11	19	23	45	1.82
239160--239216	14	3.7	14	77	20	60	10	21	22	45	1.82
239143--239235	33	2.8	33	95	0	168	10	20	21	47	1.80
241178--241213	14	2.6	14	95	0	63	33	0	22	44	1.53
241320--241421	19	5.6	19	84	13	151	44	17	23	14	1.86
241450--241742	19	16.4	19	82	14	383	14	20	18	47	1.82
241428--241742	52	5.9	52	87	9	321	14	20	18	46	1.83
244023--244047	12	2.1	12	100	0	50	0	28	0	72	0.86
244222--244268	24	2.0	24	87	8	69	38	21	14	25	1.92
244951--245319	20	18.5	20	86	5	451	20	18	26	34	1.96
246054--246116	33	1.9	33	87	3	92	79	3	6	11	1.03
246124--246205	43	1.9	43	82	9	105	68	3	7	20	1.30
246575--246617	21	2.0	21	86	8	61	79	0	2	18	0.85
246577--246617	16	2.5	17	80	11	50	78	0	2	19	0.87
246595--246634	19	2.1	19	85	0	53	75	2	2	20	1.04
246738--246784	22	2.1	22	100	0	94	34	12	19	34	1.89
247023--247171	37	4.0	37	97	0	280	32	13	13	40	1.83
248311--248825	110	4.7	110	91	0	825	26	16	23	33	1.96
248311--248825	221	2.3	221	89	1	795	26	16	23	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
250137--250173	18	2.1	18	100	0	74	43	5	29	21	1.75
250530--250583	12	4.2	13	88	9	67	3	14	3	77	1.04
250513--250583	12	5.4	12	80	15	63	2	14	5	77	1.06
253746--253810	29	2.2	29	83	5	78	76	3	4	15	1.07
254030--254067	2	19.0	2	100	0	76	50	0	0	50	1.00
254177--254217	19	2.1	20	86	4	57	80	2	0	17	0.82
254603--254710	37	2.9	37	94	0	189	33	9	14	42	1.78
259829--259853	11	2.3	11	100	0	50	56	0	0	44	0.99
260625--260674	12	4.0	12	77	10	55	70	2	6	22	1.20
260858--261431	134	4.3	134	87	1	794	34	19	17	28	1.95
260907--261500	268	2.2	269	87	1	825	34	19	17	28	1.95
262148--262671	80	6.5	77	81	10	422	39	16	19	25	1.91
262146--262669	42	13.0	42	77	12	492	38	16	19	25	1.92
264423--264546	17	7.5	16	74	18	103	0	18	0	80	0.76
264425--264548	12	10.1	12	77	12	101	0	19	0	79	0.77
264423--264548	34	3.8	32	78	14	130	0	19	0	80	0.77
264439--264550	47	2.3	47	86	11	156	0	19	0	80	0.71
264423--264573	17	8.9	17	74	15	91	1	22	0	76	0.87
264451--264559	35	3.1	37	79	13	104	0	21	0	78	0.74
264429--264559	65	2.0	64	81	12	153	0	20	0	78	0.80
266007--266045	14	2.8	14	92	0	69	35	5	15	43	1.69
266007--266071	31	2.2	31	84	13	84	36	6	18	38	1.76

Tables:   1   2

The End!