genome.fa.s3953.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003953.1 Hibiscus syriacus cultivar Beakdansim tig00008548_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124268

Tables:   1   

This is table  1  of  1  ( 98 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
530--1095	133	4.3	134	86	3	747	34	19	18	28	1.95
593--1163	133	4.3	132	83	4	629	34	19	17	28	1.94
1842--2323	80	6.0	80	79	12	465	39	16	18	25	1.92
1855--2279	197	2.1	197	86	7	599	38	16	19	25	1.92
1813--2321	42	12.6	42	77	11	462	38	17	19	25	1.92
4064--4204	5	27.4	5	78	17	130	0	20	0	78	0.79
4063--4204	27	5.3	26	81	9	153	0	20	0	78	0.79
4068--4204	37	3.9	33	80	16	145	0	21	0	78	0.80
4064--4210	22	6.8	22	76	14	110	0	21	0	77	0.81
4175--4217	18	2.4	18	84	7	52	0	27	0	72	0.85
9579--9619	2	21.0	2	95	5	75	48	0	0	51	1.00
11090--11132	19	2.3	19	84	11	61	81	2	0	16	0.79
11095--11141	12	3.5	13	82	8	51	78	2	2	17	0.94
13461--13513	26	2.0	26	88	0	79	26	41	1	30	1.66
13954--14026	15	4.9	15	76	3	85	42	5	20	31	1.75
13954--14026	30	2.5	29	90	2	119	42	5	20	31	1.75
14241--14314	26	2.7	27	78	14	62	41	0	4	54	1.19
14357--14413	23	2.5	23	79	0	60	49	1	1	47	1.22
14403--14558	54	2.9	55	76	17	159	49	1	0	48	1.14
14433--14557	30	4.3	29	73	19	95	48	0	0	49	1.12
14749--14864	42	2.8	42	93	0	187	46	17	18	18	1.84
19210--19258	20	2.5	20	75	0	53	53	4	10	32	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26432--26482	2	26.0	2	96	4	95	50	0	0	49	1.00
26468--26823	38	9.9	35	77	15	320	42	3	7	46	1.47
26470--26824	73	4.9	70	77	15	307	42	3	7	46	1.47
26509--26823	36	8.8	36	76	15	298	43	3	6	47	1.44
26656--26709	28	2.0	28	88	3	83	38	3	9	48	1.53
26570--26709	25	5.6	25	71	12	94	41	3	7	47	1.48
26645--26722	28	2.9	27	82	14	74	41	3	8	46	1.54
26681--26847	38	4.5	37	83	7	207	40	2	4	51	1.38
28116--28197	33	2.5	32	80	7	94	20	6	1	71	1.14
31757--32016	95	2.7	95	87	2	353	33	16	16	33	1.92
33143--34617	84	17.7	84	83	2	1660	33	24	18	22	1.97
41007--41193	95	2.0	94	86	3	259	31	16	23	28	1.96
41577--41839	55	4.8	55	87	2	370	30	20	19	29	1.97
41576--41839	109	2.4	110	89	3	399	29	20	20	29	1.97
48154--48185	2	16.0	2	100	0	64	50	0	0	50	1.00
48173--48219	24	1.9	25	82	4	60	40	4	8	46	1.54
50629--50673	20	2.2	20	88	0	72	26	22	26	24	2.00
51012--51329	55	5.8	55	86	4	385	30	20	18	30	1.96
52598--52622	13	1.9	13	100	0	50	80	0	8	12	0.92
54606--54662	21	2.7	21	91	0	87	24	19	22	33	1.97
54721--54867	64	2.3	64	83	4	172	34	12	21	32	1.90
56914--56951	12	3.0	13	88	7	60	47	7	10	34	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63247--63405	64	2.5	64	84	6	180	31	13	21	33	1.92
66988--67063	31	2.3	34	84	10	97	73	2	3	19	1.11
66991--67063	34	2.2	34	82	7	87	72	2	4	20	1.14
66925--67042	15	7.6	15	68	16	71	72	2	2	22	1.10
66962--67063	31	3.2	31	79	9	91	72	1	3	21	1.11
68304--68375	26	2.7	26	82	10	74	68	1	1	29	1.07
68367--68625	39	6.6	38	81	13	276	47	8	3	41	1.50
68485--68745	39	6.8	38	75	14	164	45	7	4	42	1.52
74133--74163	16	1.9	16	100	0	62	48	19	6	25	1.72
74881--74946	24	2.8	23	74	19	64	74	7	4	13	1.20
75003--75040	8	4.6	8	90	3	58	86	0	2	10	0.66
75165--75207	18	2.4	17	84	7	50	72	9	2	16	1.21
75216--75277	11	5.4	11	75	12	54	66	1	3	29	1.17
77272--78842	84	18.7	84	85	0	1800	23	19	23	33	1.97
77259--78842	252	6.3	252	87	0	2013	23	19	23	33	1.97
79965--80224	95	2.7	96	85	5	330	32	16	18	31	1.94
82974--83017	16	2.9	16	76	10	56	72	4	2	20	1.13
84732--84777	3	15.7	3	82	13	60	34	2	2	60	1.21
85474--85517	12	3.7	12	87	0	52	36	11	31	20	1.88
86116--86149	16	2.1	17	88	5	52	44	2	5	47	1.42
88324--88416	46	2.0	47	85	6	127	36	11	20	31	1.89
95646--96075	99	4.3	99	94	0	716	34	16	19	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96042--96096	20	2.8	20	85	0	83	29	20	21	29	1.98
95943--96224	119	2.4	119	91	0	456	31	16	19	32	1.94
96356--96442	3	29.7	3	86	4	97	31	2	4	62	1.28
96353--96406	20	2.5	22	79	14	67	38	3	0	57	1.17
96359--96411	20	2.7	20	84	0	79	35	3	0	60	1.15
99480--99506	12	2.2	12	100	0	54	18	0	7	74	1.05
100261--100332	35	2.1	35	100	0	144	40	11	20	27	1.87
101248--101292	2	22.5	2	100	0	90	48	0	0	51	1.00
106933--106968	18	2.0	18	94	0	63	16	8	33	41	1.78
108393--108829	106	4.1	106	92	0	685	36	24	17	21	1.95
109586--109657	35	2.1	35	100	0	144	40	11	20	27	1.87
110033--110072	18	2.3	18	83	8	57	25	5	2	67	1.23
110133--110161	2	14.5	2	100	0	58	48	0	0	51	1.00
110063--110204	61	2.3	61	84	9	173	36	4	2	56	1.33
110520--110599	40	2.0	40	86	9	112	31	5	7	56	1.49
110663--110687	9	2.8	9	100	0	50	20	0	0	80	0.72
112783--112808	2	13.0	2	100	0	52	50	0	0	50	1.00
112900--112933	16	2.1	16	89	10	52	35	0	2	61	1.11
113473--113634	80	2.0	80	97	0	306	42	12	9	35	1.76
114282--114335	10	5.1	10	80	10	63	55	20	14	9	1.66
114283--114339	20	2.7	20	89	8	78	56	21	14	8	1.65
114327--114355	13	2.1	14	93	6	51	72	20	6	0	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118250--118357	45	2.4	45	87	0	153	32	10	14	42	1.80
118517--118906	58	6.8	58	81	9	356	35	6	12	45	1.68
118781--118876	27	3.4	27	67	25	72	33	4	10	52	1.55
118951--119209	93	2.8	92	80	8	256	40	7	10	40	1.69
119149--119380	39	5.7	39	74	11	187	38	6	12	41	1.69
119235--119332	50	2.0	48	88	4	142	37	7	14	40	1.73
119285--119380	38	2.5	39	87	1	140	35	5	13	45	1.66
119396--119479	39	2.2	38	80	12	102	36	4	15	42	1.68
120724--120763	21	1.9	21	94	0	71	32	22	22	22	1.98
124044--124083	21	1.9	21	94	0	71	32	22	20	25	1.98

Tables:   1

The End!