genome.fa.s3996.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003996.1 Hibiscus syriacus cultivar Beakdansim tig00008706_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  553326

Tables:   1   2   

This is table  1  of  2  ( 165 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
839--1019	100	1.8	99	80	5	222	41	10	9	37	1.73
1502--1555	17	3.2	17	78	19	51	37	0	1	61	1.07
4841--4872	15	2.1	15	94	0	55	25	18	9	46	1.79
13404--13623	83	2.6	83	94	1	377	28	12	20	38	1.89
13573--13783	115	1.9	115	89	2	318	31	14	21	32	1.93
14478--15025	116	4.8	113	86	5	695	37	13	19	29	1.91
14492--15025	224	2.4	227	88	5	764	37	13	19	29	1.90
15257--15334	6	13.0	6	86	0	93	42	0	0	57	0.98
15259--15343	18	4.7	18	81	8	93	44	0	0	55	0.99
16651--16690	19	2.1	19	85	0	53	65	0	0	35	0.93
24668--24811	72	2.0	72	98	0	279	29	16	21	31	1.95
30161--30244	23	3.7	23	96	0	150	19	27	26	27	1.99
31602--31708	23	4.7	23	95	0	178	18	28	26	27	1.98
36112--36170	23	2.6	23	81	5	66	22	23	23	30	1.99
44748--44814	25	2.6	25	95	2	116	44	5	40	8	1.60
44932--45153	81	2.7	83	83	3	261	29	18	18	33	1.95
45024--45204	41	4.4	41	80	7	188	32	19	18	29	1.95
48786--48819	11	3.1	11	91	0	59	32	0	2	64	1.08
54115--54205	45	2.0	45	100	0	182	28	13	8	49	1.71
63136--63201	29	2.3	29	89	0	96	43	16	10	28	1.81
68295--68360	27	2.4	27	84	0	78	34	36	9	19	1.84
69000--69024	6	4.2	6	100	0	50	68	16	0	16	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70927--70951	2	12.5	2	100	0	50	48	0	0	52	1.00
71765--71791	2	13.5	2	100	0	54	51	0	0	48	1.00
73018--73465	81	5.4	81	76	6	341	33	15	19	31	1.93
84334--84380	21	2.2	21	96	0	85	42	10	19	27	1.84
86157--86191	17	2.1	17	94	0	61	34	17	25	22	1.96
96345--96402	28	2.1	28	100	0	116	41	13	10	34	1.79
110744--110825	37	2.2	37	100	0	164	12	20	42	24	1.86
111348--111425	36	2.2	36	83	2	95	30	2	21	44	1.66
118724--118773	15	3.4	15	73	15	59	46	0	16	38	1.47
118739--118787	14	3.4	14	73	15	55	44	0	20	34	1.52
118723--118787	29	2.2	29	100	0	130	44	0	20	35	1.51
126312--126339	14	2.0	14	100	0	56	7	0	42	50	1.30
128175--128644	195	2.4	191	78	9	475	31	16	8	42	1.78
128808--129043	121	1.9	122	87	2	341	19	16	16	46	1.84
130933--130978	23	2.0	23	83	8	58	19	28	23	28	1.98
131559--131600	21	2.0	22	85	4	59	21	21	30	26	1.98
138081--138166	23	3.7	23	70	20	79	19	26	25	27	1.99
141114--141138	12	2.1	12	100	0	50	40	8	36	16	1.77
141167--141222	29	1.9	29	92	0	94	10	37	28	23	1.88
141226--141300	33	2.3	33	83	4	89	10	38	22	28	1.87
141239--141310	33	2.2	32	80	7	81	12	36	25	26	1.91
141292--141324	14	2.4	14	94	0	57	6	30	39	24	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
141895--141933	16	2.3	18	91	8	64	38	0	0	61	0.96
144266--144333	22	3.0	22	77	14	68	42	7	0	50	1.30
149632--149764	66	2.0	66	97	0	248	18	21	28	31	1.97
158550--158608	13	4.2	13	74	19	55	67	16	3	11	1.34
158568--158624	18	3.4	18	70	25	61	66	22	3	7	1.31
158558--158624	31	2.1	32	97	2	127	67	20	2	8	1.32
158876--158940	24	2.8	24	72	17	57	52	20	12	15	1.74
174379--174403	2	12.5	2	100	0	50	52	0	0	48	1.00
177747--177827	42	1.9	43	87	2	119	51	8	17	22	1.72
185525--185586	25	2.4	26	83	5	81	40	8	0	51	1.31
186325--186351	4	6.8	4	100	0	54	22	0	0	77	0.76
187917--187961	23	2.0	23	86	0	63	26	28	24	20	1.99
187940--188243	149	2.0	149	98	0	581	35	20	16	27	1.94
188719--188756	20	1.9	20	94	0	67	7	31	36	23	1.84
194903--195204	149	2.0	149	98	0	577	36	20	16	27	1.93
195682--195719	20	1.9	20	94	0	67	7	31	36	23	1.84
202853--202894	21	2.0	21	90	0	66	30	11	7	50	1.66
202883--202958	33	2.4	32	80	6	100	32	7	13	46	1.72
203826--203865	2	20.0	2	100	0	80	50	0	0	50	1.00
219999--220028	2	15.0	2	100	0	60	50	0	0	50	1.00
220124--220181	28	2.1	28	100	0	116	37	17	10	34	1.84
221627--221654	8	3.5	8	100	0	56	10	21	42	25	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
221687--221735	19	2.7	17	84	9	53	26	20	28	24	1.99
221716--221823	56	1.9	55	85	5	146	26	20	23	29	1.99
221716--221840	56	2.2	54	81	12	137	27	20	23	29	1.98
230451--230611	65	2.5	65	83	5	202	27	18	24	30	1.97
230456--230653	65	3.1	63	78	10	188	26	17	24	31	1.97
231182--231219	2	19.5	2	84	15	53	47	0	2	50	1.15
233813--233884	33	2.2	33	89	0	108	31	19	22	26	1.97
237574--237607	2	17.0	2	100	0	68	0	50	0	50	1.00
238138--238279	51	2.8	51	87	0	212	42	21	23	13	1.88
241515--241643	46	2.8	46	95	0	231	43	13	9	33	1.77
252501--253028	260	2.0	260	97	0	986	41	20	14	23	1.89
254891--254955	32	2.0	32	88	5	96	27	33	20	18	1.96
255730--255793	26	2.5	26	100	0	128	32	35	12	18	1.89
268801--268840	20	2.0	20	85	0	53	57	2	2	37	1.26
275459--275499	20	2.0	20	100	0	82	14	46	19	19	1.84
275678--275892	114	1.9	114	87	1	315	28	16	6	48	1.72
286073--286133	2	30.5	2	100	0	122	50	0	0	49	1.00
293496--293532	2	18.5	2	100	0	74	51	0	0	48	1.00
294247--294356	26	4.2	26	90	0	166	12	19	45	22	1.84
294245--294356	52	2.2	52	93	0	188	12	18	45	23	1.83
299310--299356	21	2.2	21	88	0	67	40	2	2	55	1.24
300559--300610	26	2.0	27	84	3	70	34	28	7	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
301610--301666	28	2.0	29	89	3	89	42	5	5	47	1.48
310030--310076	24	2.0	24	83	8	60	0	38	34	27	1.57
310191--310245	21	2.7	19	76	15	56	32	21	21	23	1.98
311165--311209	22	2.0	22	86	0	63	40	11	2	46	1.52
338060--338092	13	2.6	13	85	4	50	78	0	0	21	0.75
338212--338249	19	2.0	19	89	0	58	52	7	28	10	1.64
350942--350966	2	12.5	2	100	0	50	48	0	0	52	1.00
354481--354645	87	1.9	87	94	0	294	27	27	17	27	1.98
359814--359841	11	2.5	11	100	0	56	57	0	7	35	1.26
362534--362587	25	2.2	25	100	0	108	42	7	14	35	1.74
363835--363865	16	2.0	16	93	6	55	64	0	0	35	0.94
363918--363962	23	1.9	23	86	4	63	42	4	0	53	1.21
364145--364212	31	2.2	31	97	0	127	51	8	8	30	1.63
374963--374995	15	2.2	15	100	0	66	33	9	18	39	1.82
375258--375328	36	2.0	36	81	10	83	35	4	2	57	1.33
380370--380400	14	2.3	14	94	5	55	48	6	0	45	1.28
395931--396104	21	7.9	21	69	23	99	32	28	21	17	1.96
395931--396152	67	3.3	67	94	0	363	33	28	20	17	1.96
396960--397017	20	2.7	20	86	10	71	22	22	22	32	1.98
400192--400230	18	2.2	18	85	0	51	46	0	15	38	1.46
410186--410251	27	2.5	27	90	2	107	42	33	9	15	1.78
414724--414761	18	2.1	18	85	9	51	23	2	0	73	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
417496--417539	21	2.0	23	86	8	65	56	9	0	34	1.31
421953--422149	102	1.9	102	97	0	376	41	10	8	39	1.70
426529--426584	27	2.2	26	84	12	71	17	3	21	57	1.55
428513--428546	2	17.0	2	100	0	68	0	50	0	50	1.00
428546--428580	2	17.5	2	100	0	70	48	0	0	51	1.00
429661--429868	105	2.0	105	80	5	233	27	14	28	28	1.96
429756--430572	120	6.9	120	77	5	653	29	15	26	28	1.96
429773--430458	240	2.8	240	80	3	754	29	16	26	27	1.97
438348--438673	163	2.0	163	96	3	604	24	20	11	42	1.86
443452--443490	18	2.2	18	86	9	53	43	7	25	23	1.80

Tables:   1   2