Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003996.1 Hibiscus syriacus cultivar Beakdansim tig00008706_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  553326

Tables:   1   2   

This is table  2  of  2  ( 165 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
444105--444209
32
3.3
30
73
16
97
45
5
0
47
1.33
444082--444239
31
5.1
30
75
17
128
44
4
0
50
1.26
444168--444240
30
2.5
28
84
8
83
46
2
0
50
1.15
444240--444317
30
2.5
33
75
16
83
53
0
3
42
1.19
444387--444461
29
2.6
29
85
4
98
65
2
1
30
1.15
446507--446550
17
2.5
17
81
3
52
63
4
2
29
1.26
447041--447074
16
2.2
15
89
5
50
29
2
14
52
1.56
456019--456057
2
19.5
2
100
0
78
48
0
0
51
1.00
462376--462410
18
1.9
18
88
11
54
2
45
0
51
1.16
463326--463368
7
6.1
7
94
0
77
41
39
0
18
1.51
465312--465407
16
6.1
15
78
13
88
64
0
1
34
1.01
465311--465564
52
5.0
47
69
21
156
61
0
3
35
1.12
465471--465543
13
5.6
13
70
22
55
67
0
0
32
0.91
465467--465560
16
5.6
16
76
9
80
63
0
1
35
1.01
465467--465555
34
2.6
34
77
8
101
65
0
0
34
0.93
465472--465565
47
2.0
47
83
4
118
65
0
1
32
0.99
465300--465613
159
2.0
160
89
4
492
59
0
3
36
1.17
476090--476121
2
16.0
2
100
0
64
50
0
0
50
1.00
476119--476143
4
6.2
4
100
0
50
24
0
0
76
0.80
476236--476296
2
30.5
2
100
0
122
49
0
0
50
1.00
484434--484468
18
1.9
18
100
0
70
2
51
0
45
1.16
485088--485124
3
12.3
3
100
0
74
35
0
0
64
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
486282--486673
195
2.0
196
97
0
750
23
11
14
50
1.75
486816--486926
30
3.8
30
77
12
97
21
14
6
57
1.59
486961--487036
29
2.6
30
80
4
91
17
14
14
53
1.72
491381--491457
36
2.2
35
88
4
111
50
0
0
49
1.00
491381--491476
36
3.0
32
76
17
85
48
0
0
51
1.00
498853--498887
17
2.1
17
100
0
70
31
5
0
62
1.18
499304--499447
60
2.5
60
81
5
152
34
15
17
33
1.91
504446--504487
11
3.4
12
78
15
50
40
0
0
59
0.97
524278--524356
32
2.5
32
100
0
158
46
31
5
16
1.68
524278--524372
32
2.9
32
93
3
145
43
35
7
13
1.72
524374--524505
33
3.9
33
73
10
122
34
19
9
36
1.84
524357--524495
71
1.9
71
85
4
190
34
23
10
32
1.88
526600--526624
2
12.5
2
100
0
50
52
0
0
48
1.00
527633--527657
9
2.8
9
100
0
50
12
0
0
88
0.53
528269--528329
32
1.9
32
96
0
113
50
19
4
24
1.67
528414--528620
68
3.0
68
92
0
351
49
12
12
26
1.74
528416--528602
31
5.6
31
65
17
99
50
11
12
25
1.73
533464--533489
13
2.0
13
100
0
52
53
7
38
0
1.30
538578--538620
23
1.9
23
85
4
61
48
0
4
46
1.22
540972--541016
12
3.8
12
91
8
74
24
6
0
68
1.13
540975--541011
11
3.3
11
92
7
65
24
8
0
67
1.17
543699--543729
15
2.1
15
93
0
53
45
12
12
29
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
551035--551065
15
2.1
15
93
0
53
41
12
12
32
1.81

Tables:   1   2

The End!