Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004008.1 Hibiscus syriacus cultivar Beakdansim tig00008737_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  207271

Tables:   1   2   

This is table  2  of  2  ( 141 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
176743--176800
20
2.9
20
94
0
98
17
22
22
37
1.93
177860--177913
24
2.2
24
90
0
81
24
16
20
38
1.92
178088--178112
12
2.1
12
100
0
50
72
0
28
0
0.86
180407--180504
19
5.7
19
67
22
72
43
20
20
15
1.87
180408--180507
33
3.0
33
89
2
148
42
20
20
18
1.90
180500--180542
20
2.2
20
87
4
61
16
18
23
41
1.89
180528--180561
14
2.4
14
85
0
50
8
23
20
47
1.78
180683--180719
14
2.6
14
86
0
56
45
21
0
32
1.52
182077--182172
21
4.6
21
65
14
54
23
20
32
22
1.98
182116--182199
42
2.0
42
85
0
114
22
16
39
21
1.92
184202--184262
20
3.1
19
79
9
68
44
18
24
13
1.85
184227--184303
33
2.3
34
90
2
120
37
25
24
11
1.90
184885--184937
20
2.7
21
85
11
76
26
18
28
26
1.98
184905--185041
41
3.4
41
80
6
127
20
19
21
38
1.93
184968--185060
20
4.6
20
81
4
105
17
23
18
40
1.90
184968--185060
41
2.3
41
98
0
177
17
23
18
40
1.90
189464--189504
20
2.0
22
90
9
68
39
7
17
36
1.77
194053--194091
20
2.0
20
89
0
60
33
23
10
33
1.88
198726--198772
24
2.0
22
88
8
67
76
4
4
14
1.09
198726--198771
12
3.8
12
76
21
51
76
4
4
15
1.11
205100--205143
2
22.0
2
100
0
88
50
0
0
50
1.00

Tables:   1   2

The End!