Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004011.1 Hibiscus syriacus cultivar Beakdansim tig00008748_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  243343

Tables:   1   2   

This is table  2  of  2  ( 162 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
141598--142217
123
5.0
123
85
3
685
28
19
17
34
1.95
145629--146070
43
10.2
43
81
3
458
27
18
19
35
1.95
145629--146070
87
5.1
86
81
3
460
27
18
19
35
1.95
145655--146090
130
3.3
129
88
3
574
27
19
18
35
1.95
146550--146644
39
2.4
39
85
0
127
31
23
26
18
1.98
151363--151405
21
2.0
21
81
0
50
53
20
0
25
1.46
153076--153151
35
2.2
35
87
0
107
39
21
1
38
1.62
153548--153795
130
1.9
130
90
0
397
36
14
12
35
1.85
153562--153826
130
2.0
129
81
4
300
40
13
12
33
1.83
154265--154298
16
2.0
18
88
11
54
64
5
2
26
1.30
163111--163319
60
3.5
60
83
2
224
20
29
8
41
1.82
170879--170923
19
2.4
18
82
17
56
28
8
13
48
1.72
174521--174559
17
2.3
17
86
0
51
30
5
12
51
1.62
183059--183093
2
17.5
2
100
0
70
51
0
0
48
1.00
190380--190409
15
1.9
16
93
6
53
26
10
20
43
1.83
190315--190514
95
2.1
95
95
0
355
26
12
11
50
1.73
190471--190504
15
2.3
15
90
10
52
26
8
20
44
1.81
190348--190497
49
3.1
49
65
16
132
30
12
12
46
1.77
194500--194539
20
2.0
21
95
5
73
32
22
20
25
1.98
200524--200561
16
2.4
16
100
0
76
36
13
26
23
1.91
202126--202185
21
3.0
21
85
9
90
20
21
30
28
1.98
207254--207340
41
2.1
41
86
2
120
24
20
21
33
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
207116--207895
249
3.1
249
88
1
1098
33
16
17
32
1.92
207738--207817
42
1.9
42
84
0
106
26
18
20
35
1.95
207685--208209
189
2.8
189
84
3
655
32
15
18
34
1.92
208038--208373
169
2.0
169
85
1
449
31
14
19
34
1.92
208422--208819
61
6.5
62
81
4
432
26
19
16
37
1.93
208718--208894
90
2.0
90
85
6
243
25
20
15
37
1.92
209104--209237
55
2.4
55
84
0
178
32
19
20
26
1.97
209201--209385
82
2.3
81
84
4
237
39
20
17
22
1.92
209521--209549
3
9.7
3
100
0
58
34
0
0
65
0.93
211406--211447
15
2.6
16
82
17
52
33
4
0
61
1.17
212241--212329
36
2.4
36
94
1
151
47
6
24
21
1.75
221343--221678
168
2.0
167
96
3
622
22
14
18
44
1.85
223393--223430
20
1.9
20
88
0
58
21
26
10
42
1.85
224080--224111
2
16.5
2
93
6
57
46
0
0
53
1.00
224705--224736
14
2.3
14
100
0
64
6
15
28
50
1.68
224706--224756
24
2.1
24
85
0
66
11
11
21
54
1.68
225827--225883
16
3.6
16
90
0
96
8
7
22
61
1.50
226271--226311
19
2.2
19
100
0
82
9
51
12
26
1.70
229964--230015
25
2.0
28
81
11
65
44
0
0
55
0.99
235569--235594
7
3.7
7
100
0
52
53
0
0
46
1.00

Tables:   1   2

The End!