Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004019.1 Hibiscus syriacus cultivar Beakdansim tig00008779_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  225756

Tables:   1   2   

This is table  2  of  2  ( 156 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
170994--171191
85
2.2
97
80
13
226
44
1
8
45
1.43
170969--171180
23
8.8
23
70
13
133
42
1
9
46
1.45
171086--171218
11
10.9
11
71
16
59
46
1
5
46
1.34
171067--171238
85
2.0
85
83
6
215
45
1
8
44
1.45
171319--171363
24
1.9
24
86
4
65
40
2
4
53
1.33
171330--171371
17
2.5
17
80
0
57
40
0
2
57
1.12
171287--171413
59
2.2
56
84
11
157
40
3
7
49
1.46
175689--176114
106
4.0
106
93
0
690
21
19
24
34
1.96
176927--177002
36
2.1
37
95
2
136
36
14
23
25
1.93
183127--183220
9
10.0
9
68
20
50
71
2
8
18
1.22
184169--184216
22
2.2
22
96
3
89
39
12
0
47
1.41
184176--184216
11
3.7
12
78
15
52
39
12
0
48
1.41
184190--184285
30
3.2
29
80
15
106
45
11
1
41
1.47
184189--184237
15
3.2
16
71
11
57
42
12
0
44
1.41
184190--184252
30
2.1
30
93
0
108
47
12
0
39
1.42
184342--184455
41
2.9
37
74
18
97
44
13
1
40
1.53
184465--184504
21
1.9
21
94
0
71
57
12
0
30
1.36
184532--184586
18
3.4
18
65
31
52
52
9
0
38
1.33
184717--184781
28
2.3
29
82
10
82
46
15
1
36
1.55
185015--185059
23
2.0
22
83
12
56
0
44
2
53
1.13
185171--185228
11
5.1
11
75
8
62
39
18
20
20
1.92
185171--185228
23
2.5
23
94
0
98
39
18
20
20
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
185171--185222
12
4.5
12
78
7
54
42
17
19
21
1.89
185367--185449
29
2.9
29
87
0
103
15
22
39
21
1.91
186494--186522
15
1.9
15
100
0
58
20
0
17
62
1.33
188474--188545
38
2.0
34
82
12
83
30
11
44
13
1.79
188567--188608
20
2.1
20
100
0
84
33
23
14
28
1.94
192648--192807
32
5.1
31
85
9
202
27
16
20
35
1.95
192648--192807
31
5.1
31
86
6
207
27
16
20
35
1.95
193509--193557
19
2.6
19
83
6
55
32
18
6
42
1.75
195426--195453
11
2.5
11
100
0
56
53
0
7
39
1.28
198507--198531
2
12.5
2
100
0
50
0
48
0
52
1.00
198549--198577
2
14.5
2
100
0
58
48
0
0
51
1.00
203372--203414
18
2.4
18
100
0
86
30
23
20
25
1.99
209060--209172
32
3.5
31
72
17
97
42
23
10
23
1.85
209733--209771
20
2.0
21
90
10
64
17
7
7
66
1.40

Tables:   1   2

The End!