Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004033.1 Hibiscus syriacus cultivar Beakdansim tig00008812_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71016

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3690--3736
10
4.6
10
82
12
51
4
10
6
78
1.06
3690--3736
21
2.3
20
79
13
51
4
10
6
78
1.06
11314--16408
4
1273.8
4
93
0
5621
16
25
8
49
1.74
16406--16483
8
9.8
8
95
0
138
1
25
23
50
1.57
21681--21744
16
4.0
16
75
0
56
45
21
15
17
1.85
21924--22083
60
2.7
60
76
10
148
28
22
6
42
1.78
22436--22479
22
2.0
22
82
4
54
52
15
0
31
1.44
30473--30524
25
2.1
25
100
0
104
40
7
7
44
1.62
32660--32687
13
2.2
13
100
0
56
35
14
0
50
1.43
32992--33036
22
2.1
21
87
4
63
15
2
35
46
1.58
33794--33823
11
2.7
11
100
0
60
16
10
53
20
1.71
34308--34365
2
29.0
2
96
0
107
48
0
0
51
1.00
37427--37472
24
2.0
23
83
12
58
30
13
26
30
1.93
38909--38933
2
12.5
2
100
0
50
48
0
0
52
1.00
39892--40134
98
2.5
98
84
2
310
28
23
13
34
1.92
39892--40143
49
5.1
49
76
2
247
28
23
13
34
1.93
44314--44479
85
2.0
85
95
0
296
30
18
21
29
1.97
44458--44505
13
3.7
13
94
0
87
33
18
20
27
1.96
44451--44505
26
2.1
26
93
0
92
36
16
20
27
1.93
44959--45090
67
2.0
67
81
0
156
28
15
24
32
1.95
47155--47194
20
2.0
20
100
0
80
40
40
0
20
1.52
47158--47202
20
2.2
20
92
0
72
35
42
4
17
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68156--68194
20
2.0
20
85
10
53
33
5
15
46
1.68
68404--68463
20
3.0
20
72
15
61
35
16
10
38
1.82
69285--69354
20
3.5
19
81
14
88
32
24
12
30
1.93
67717--70307
880
2.9
883
94
1
4444
35
12
13
39
1.82
69914--69963
20
2.5
20
87
12
68
40
2
12
46
1.52
70170--70229
20
3.0
20
79
15
79
35
23
11
30
1.90
70172--70240
20
3.5
20
75
18
72
34
21
11
31
1.89

Tables:   1

The End!