genome.fa.s4054.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004054.1 Hibiscus syriacus cultivar Beakdansim tig00008867_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94663

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
902--952	18	2.8	18	96	0	93	33	17	5	43	1.73
1098--1165	20	3.4	20	85	0	91	36	23	19	20	1.95
1170--1220	19	2.7	19	93	0	75	45	17	17	19	1.86
1229--1293	20	3.3	20	82	4	80	18	16	26	38	1.92
1779--1820	21	2.2	20	87	12	61	21	35	16	26	1.94
1802--1879	21	3.6	22	74	10	72	21	35	19	23	1.96
1774--1879	42	2.5	41	76	4	104	20	35	18	24	1.95
3282--3320	14	2.8	14	88	0	60	41	0	12	46	1.42
3284--3338	29	1.9	29	85	3	76	38	0	14	47	1.45
3505--3641	34	3.9	34	83	5	148	23	20	21	35	1.96
3495--3777	20	15.4	20	71	17	211	24	18	21	34	1.96
3541--3712	94	1.8	94	87	2	256	23	19	22	34	1.97
3612--3769	54	2.9	54	90	0	253	23	17	24	34	1.96
3495--3770	128	2.2	128	82	4	326	23	18	22	34	1.96
3937--3979	12	3.6	12	87	0	59	16	4	25	53	1.62
3944--3977	6	5.7	6	85	0	50	17	2	20	58	1.51
6014--6050	14	2.6	14	91	4	56	5	21	21	51	1.68
6240--6293	24	2.2	24	90	0	81	40	20	16	22	1.91
7103--7190	20	4.4	20	91	0	122	27	18	26	28	1.98
7157--7230	20	3.7	20	89	3	96	28	20	16	35	1.94
7117--7231	40	2.9	39	80	8	108	27	18	20	33	1.96
7320--7356	19	1.9	19	88	0	56	21	18	24	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15315--15348	16	2.1	17	88	5	52	55	5	0	38	1.24
15691--15732	19	2.2	19	95	0	75	30	9	7	52	1.61
17408--17456	22	2.3	21	83	13	64	32	26	16	24	1.96
17652--17709	14	4.2	14	86	6	75	56	6	3	32	1.42
22550--22627	20	3.9	20	78	10	88	28	26	21	23	1.99
22824--22882	24	2.5	23	78	15	68	30	22	6	40	1.79
23367--23437	19	3.7	19	86	0	106	21	32	16	29	1.95
29503--29575	18	3.9	18	84	7	101	28	31	20	19	1.97
33403--33518	22	5.2	22	77	8	101	32	23	16	27	1.96
44903--44961	30	2.0	29	87	9	84	35	11	8	44	1.72
53761--53785	2	12.5	2	100	0	50	52	0	0	48	1.00
58447--58473	2	13.5	2	100	0	54	48	0	0	51	1.00
59200--59401	101	2.0	101	99	0	395	34	8	10	46	1.69
62539--62567	11	2.6	11	100	0	58	44	24	10	20	1.82
64625--64702	31	2.6	29	81	4	84	46	1	8	43	1.43
66195--66220	12	2.2	12	100	0	52	57	0	7	34	1.27
70240--70311	31	2.3	31	90	0	108	43	9	6	40	1.65
70719--70749	12	2.6	12	100	0	62	74	0	19	6	1.03
73496--73608	46	2.5	46	94	2	192	47	5	8	38	1.57
73588--73683	2	50.0	2	91	8	164	50	0	0	50	1.00
77060--77105	24	1.9	24	100	0	92	26	8	21	43	1.81
77828--77897	18	3.7	18	78	14	77	25	31	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77843--77885	22	2.0	22	95	0	77	27	27	18	25	1.98
79414--79516	45	2.3	44	86	6	136	28	15	17	38	1.90
80305--80362	24	2.4	24	91	0	89	20	20	20	37	1.94
81370--81396	2	13.5	2	100	0	54	48	0	0	51	1.00
82597--82647	18	2.6	20	81	15	70	33	1	0	64	1.05
90555--90591	18	2.1	18	89	0	56	40	2	0	56	1.13
92066--92122	3	19.0	3	100	0	114	66	0	0	33	0.92
93292--93425	72	1.9	71	81	7	166	28	14	18	38	1.90

Tables:   1

The End!