Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004105.1 Hibiscus syriacus cultivar Beakdansim tig00008979_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  262281

Tables:   1   2   

This is table  2  of  2  ( 162 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
213789--213842
28
1.9
28
92
0
90
24
14
20
40
1.90
214811--215239
213
2.0
213
97
0
804
25
20
31
21
1.98
218712--219269
51
10.8
51
80
4
557
30
15
32
22
1.95
218712--219131
153
2.8
153
93
1
691
29
16
33
20
1.94
219695--219750
21
2.7
21
91
2
96
46
12
8
32
1.73
223711--223753
21
2.0
21
90
0
68
32
27
23
16
1.96
224290--224816
103
5.1
103
95
0
964
26
12
23
37
1.91
224833--224895
23
2.7
23
90
4
101
20
28
26
23
1.99
230939--230981
21
2.0
21
90
0
68
32
27
23
16
1.96
231009--231046
20
1.9
20
88
0
58
23
34
31
10
1.89
231525--232051
103
5.1
103
96
0
973
25
13
24
36
1.92
232070--232130
23
2.7
23
84
5
79
22
27
22
26
1.99
233045--233096
25
2.2
23
89
6
77
26
5
9
57
1.53
233051--233103
25
2.1
25
96
0
97
32
7
9
50
1.62
239728--239850
24
5.1
24
84
5
151
26
16
18
39
1.91
239787--239860
24
3.1
24
84
3
87
22
14
18
43
1.87
250785--250824
17
2.2
19
86
8
57
77
2
2
17
0.99
250738--250816
26
2.9
27
75
15
74
74
6
3
15
1.16
250988--251018
10
3.1
10
100
0
62
80
0
9
9
0.90
251024--251127
43
2.5
40
82
6
109
61
1
3
32
1.25
251195--251221
13
2.1
13
100
0
54
70
0
0
29
0.88
251201--251263
21
3.0
20
69
26
58
69
0
6
23
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
251201--251265
19
3.2
19
68
21
51
69
0
6
24
1.11
252589--252855
110
2.5
108
81
10
307
24
18
23
33
1.97
253589--253734
65
2.2
67
85
6
190
36
8
20
34
1.83
253813--254003
36
5.5
36
74
14
186
37
12
20
28
1.90
253734--254036
101
3.0
102
85
3
299
39
12
19
29
1.88
253918--254003
37
2.4
35
88
3
118
39
13
20
25
1.90
255694--255753
26
2.4
25
83
8
70
3
18
3
75
1.09
255695--255747
13
4.0
13
81
11
63
1
16
3
77
1.01
255694--255746
28
2.0
25
89
10
79
3
16
3
75
1.10
256975--257007
7
4.7
7
100
0
66
54
15
15
15
1.71
258773--258837
25
2.6
25
80
14
71
72
4
7
15
1.24
258818--258858
14
2.9
14
85
3
55
78
2
2
17
0.98
259040--259106
28
2.4
29
80
9
79
73
1
4
20
1.09
259074--259157
37
2.2
38
81
10
100
65
2
4
27
1.25
259095--259155
16
3.5
16
70
20
50
63
1
6
27
1.28
259189--259222
6
5.7
6
96
0
50
50
8
0
41
1.34
259220--259254
8
4.1
8
86
13
52
71
0
0
28
0.86
259218--259299
13
6.4
13
69
12
62
67
0
2
30
1.04
259194--259307
18
6.6
18
71
17
57
62
1
1
34
1.16
261323--261357
16
2.1
17
94
5
63
31
8
25
34
1.86

Tables:   1   2

The End!