genome.fa.s4108.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004108.1 Hibiscus syriacus cultivar Beakdansim tig00008986_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87073

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2127--2182	26	2.1	28	90	6	89	48	19	0	32	1.49
3989--4064	16	4.8	16	91	3	109	34	6	28	30	1.83
5794--6468	137	4.9	137	88	1	861	25	18	29	26	1.98
13350--14209	3	289.0	3	97	2	1630	33	0	0	66	0.92
17852--17910	31	1.9	31	96	0	109	57	8	11	22	1.61
21839--21868	14	2.1	14	100	0	60	40	6	13	40	1.71
23675--23954	84	3.3	84	83	5	334	25	20	23	31	1.98
23953--24004	27	1.9	27	92	0	86	38	7	15	38	1.76
24006--24227	36	6.1	36	86	2	284	39	13	21	25	1.91
24006--24227	109	2.0	108	88	4	331	39	13	21	25	1.91
24006--24227	73	3.1	73	88	1	304	39	13	21	25	1.91
24571--24941	106	3.5	106	87	3	530	22	19	25	32	1.97
30160--30203	16	2.8	16	96	3	81	36	0	0	63	0.95
30160--30222	16	4.2	14	88	8	65	31	0	3	65	1.09
30288--30322	17	2.0	18	88	5	54	40	0	0	60	0.97
30318--30360	22	2.0	22	86	9	61	48	9	0	41	1.35
30359--33582	4	810.8	4	98	1	6315	25	0	25	49	1.50
34343--34427	31	2.7	31	92	0	134	36	14	20	29	1.91
39431--39480	23	2.3	23	82	6	59	36	2	2	60	1.20
39871--40248	158	2.4	159	85	4	516	27	18	6	47	1.74
47291--47328	20	1.9	19	89	5	58	52	5	15	26	1.64
56715--56762	2	24.0	2	100	0	96	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58552--58584	6	5.5	6	100	0	66	0	30	33	36	1.58
61041--61075	2	17.5	2	100	0	70	51	0	0	48	1.00
61550--61590	2	20.5	2	100	0	82	51	0	0	48	1.00
63399--63455	21	2.8	20	76	10	53	61	3	0	35	1.13
63548--63594	19	2.4	19	82	3	58	53	2	14	29	1.53
71082--71125	14	2.9	16	76	13	56	34	4	50	11	1.59
83405--83784	53	7.3	53	81	8	406	22	27	20	29	1.98
83434--83784	155	2.2	158	86	6	491	21	27	21	30	1.98
83849--83928	42	1.9	42	97	0	151	33	20	18	27	1.96
83917--83941	13	1.9	13	100	0	50	24	20	24	32	1.98
84148--84227	41	2.0	41	82	5	99	33	23	17	25	1.96
83965--84456	210	2.3	211	89	3	731	32	19	15	31	1.94

Tables:   1

The End!