Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004118.1 Hibiscus syriacus cultivar Beakdansim tig00009013_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  338822

Tables:   1   2   

This is table  2  of  2  ( 171 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
214464--214582
21
5.6
21
77
11
125
33
24
21
21
1.97
214464--214583
42
2.8
43
91
5
188
33
24
20
21
1.97
214484--214601
21
5.6
20
71
17
73
35
21
21
22
1.96
216204--216237
2
17.0
2
100
0
68
50
0
0
50
1.00
217234--217323
30
3.2
30
65
26
86
53
21
3
22
1.60
217259--217342
25
3.2
25
64
26
64
53
19
3
23
1.60
217230--217357
55
2.3
55
96
4
233
53
21
3
21
1.59
217335--217387
4
13.2
4
100
0
106
50
24
0
24
1.49
217711--217806
42
2.3
42
83
0
120
38
20
16
23
1.93
217735--217806
21
3.4
21
78
0
81
38
23
16
20
1.92
218484--218529
2
23.5
2
95
4
85
52
0
0
47
1.00
220636--220666
4
7.8
4
100
0
62
48
25
0
25
1.52
220941--220982
2
21.5
2
95
4
77
52
0
0
47
1.00
221282--221369
44
2.0
44
100
0
176
36
20
11
31
1.88
223631--223704
38
2.0
37
84
5
96
47
4
1
47
1.29
240010--240154
69
2.1
68
93
1
245
24
25
28
21
1.99
241808--241844
14
2.6
14
91
0
56
64
0
0
35
0.94
242581--242657
39
1.9
40
81
5
93
33
15
11
38
1.84
243616--243649
2
17.0
2
100
0
68
50
0
0
50
1.00
247774--247804
3
10.3
3
100
0
62
67
0
0
32
0.91
248930--248965
6
6.0
6
100
0
72
16
16
16
50
1.79
249065--249147
24
3.5
24
76
1
78
59
13
14
13
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
251499--251527
5
6.0
5
92
8
51
82
0
17
0
0.66
260193--260342
76
2.0
76
100
0
300
38
30
8
22
1.84
260373--260399
2
13.5
2
100
0
54
48
0
0
51
1.00
263573--263703
68
1.9
69
85
4
185
33
11
17
37
1.86
265747--265801
2
27.5
2
96
0
101
49
0
1
49
1.11
268102--268179
20
3.9
20
96
0
138
25
28
8
37
1.86
268857--268881
3
8.3
3
100
0
50
36
32
0
32
1.58
272389--272449
24
2.6
25
78
17
69
44
0
0
55
0.99
272483--272527
13
3.5
13
88
8
65
13
15
53
17
1.73
275203--275321
41
2.9
42
89
1
186
25
21
22
31
1.98
277473--277513
2
20.5
2
100
0
82
51
0
0
48
1.00
308885--309138
50
5.0
50
87
1
303
25
12
15
46
1.80
308949--309138
99
1.9
100
90
1
301
25
12
16
45
1.83
312543--312582
20
2.0
20
90
0
62
25
10
10
55
1.64
313367--313405
15
2.4
17
87
12
55
28
15
5
51
1.64
316548--316703
78
2.0
78
83
3
199
26
16
10
46
1.80
317268--317401
68
2.0
67
85
7
173
36
2
6
53
1.43
317351--317385
18
2.0
17
94
5
61
34
0
0
65
0.93
317296--317432
68
2.0
66
80
8
152
35
3
6
54
1.44
317489--317576
33
2.6
33
83
8
88
44
2
7
45
1.45
317516--317588
33
2.2
32
83
7
92
43
2
4
49
1.36
317564--317726
71
2.3
69
82
13
185
52
4
3
39
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
319346--319414
24
2.8
25
82
14
81
49
1
44
4
1.31
330130--330236
52
2.1
51
87
5
153
38
16
15
28
1.90
331250--331325
36
2.1
36
82
7
91
46
1
3
48
1.29
333715--333763
25
2.0
25
88
8
73
51
0
14
34
1.43
334083--334194
59
1.9
59
94
0
197
35
16
10
37
1.83
334179--334213
2
17.5
2
100
0
70
48
0
0
51
1.00
334286--334317
2
16.5
2
93
6
57
50
0
0
50
1.00

Tables:   1   2

The End!