Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004151.1 Hibiscus syriacus cultivar Beakdansim tig00009079_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45873

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2893--2986
21
4.5
21
89
0
116
28
14
17
39
1.89
2904--2988
21
4.0
21
90
0
125
30
15
16
37
1.90
8423--8476
24
2.3
24
96
3
101
27
29
7
35
1.84
13178--13274
38
2.5
39
85
9
128
21
37
2
39
1.65
14554--14592
20
1.9
21
84
5
53
33
0
38
28
1.57
14929--14980
19
2.6
21
90
6
81
46
5
11
36
1.64
20266--20363
39
2.5
39
81
8
110
20
36
2
40
1.64
22566--22642
40
1.9
40
97
0
145
32
20
15
31
1.94
22646--22687
22
1.9
22
85
0
57
38
21
9
30
1.85
22645--22693
22
2.2
22
77
0
53
42
20
8
28
1.80
25750--25783
16
2.1
16
88
0
50
50
0
2
47
1.16
26328--26575
130
1.9
130
92
0
415
35
12
15
36
1.84
26972--27047
35
2.2
35
92
0
125
35
1
23
39
1.63
27390--27431
2
21.0
2
100
0
84
50
0
0
50
1.00
28703--28733
2
15.5
2
100
0
62
0
48
0
51
1.00
31420--31467
2
24.0
2
100
0
96
50
0
0
50
1.00
40393--40431
11
3.5
11
78
0
51
48
0
0
51
1.00
40396--40484
22
4.1
22
79
7
110
48
0
0
51
1.00
40434--40487
2
27.5
2
81
3
65
48
0
0
51
1.00
40613--40660
25
1.9
25
86
0
69
27
10
35
27
1.89
40987--41017
14
2.2
14
94
0
53
41
0
0
58
0.98
41133--41199
32
2.1
32
88
0
98
38
1
10
49
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41775--41940
58
2.8
58
85
4
219
30
12
15
42
1.84
44644--44713
29
2.4
29
80
4
79
28
34
8
28
1.87
44835--44905
23
3.1
23
67
28
69
42
15
5
36
1.71
44882--44956
35
2.1
35
90
0
114
44
18
1
36
1.59
44964--45047
35
2.5
34
86
3
107
36
2
20
40
1.65

Tables:   1

The End!