genome.fa.s4169.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004169.1 Hibiscus syriacus cultivar Beakdansim tig00009117_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  295911

Tables:   1   2   

This is table  1  of  2  ( 226 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7257--7302	19	2.4	19	85	7	58	13	10	0	76	1.03
9701--9748	18	2.7	18	93	0	87	29	35	20	14	1.93
10522--10559	20	1.9	20	100	0	76	23	23	21	31	1.98
19265--19564	54	5.6	54	89	0	438	32	21	19	27	1.97
19265--19561	162	1.8	162	91	1	488	32	21	19	27	1.97
19976--20053	19	3.8	23	79	15	75	23	30	15	30	1.95
19925--20116	95	2.0	96	85	1	260	26	25	16	32	1.96
26184--26467	54	5.3	54	81	6	326	31	20	17	29	1.96
26204--26467	108	2.4	107	86	4	377	32	20	17	29	1.96
28090--28131	17	2.5	17	88	0	66	42	11	16	28	1.84
29573--29735	60	2.8	58	78	10	179	17	23	27	30	1.97
32024--32187	65	2.5	66	82	10	196	31	17	21	29	1.96
32046--32187	65	2.2	66	87	3	198	32	17	21	28	1.96
32046--32233	65	2.9	65	82	5	166	32	16	21	29	1.95
32838--32864	2	13.5	2	100	0	54	51	0	0	48	1.00
34315--34348	12	2.8	12	90	4	50	44	5	11	38	1.65
34826--34928	44	2.4	43	86	1	143	25	17	23	33	1.96
36923--36947	12	2.1	12	100	0	50	24	32	16	28	1.96
38593--38631	20	1.9	21	84	5	53	28	17	5	48	1.68
40722--40887	65	2.5	65	80	12	192	30	18	22	28	1.97
40777--40915	65	2.2	64	89	3	208	27	17	23	31	1.97
40777--40934	65	2.4	64	86	8	196	27	17	23	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41781--41927	41	3.6	41	70	17	126	31	21	17	29	1.96
41773--41934	83	2.0	81	87	2	234	31	21	17	29	1.96
43449--43496	23	2.2	23	85	7	64	31	4	0	64	1.12
43594--43640	24	2.0	24	82	0	58	65	2	0	31	1.04
43584--43665	30	2.8	28	80	14	76	63	2	2	31	1.20
45809--45971	87	1.9	87	93	2	283	40	9	15	34	1.80
46084--46601	260	2.0	246	90	5	813	30	17	15	37	1.90
49320--49890	183	3.1	183	95	1	1002	33	16	14	35	1.89
51100--51144	3	15.0	3	85	0	63	26	33	2	37	1.69
51104--51161	12	4.8	12	89	0	71	22	32	5	39	1.76
51104--51161	6	9.7	6	86	0	62	22	32	5	39	1.76
52655--54209	200	7.8	200	96	0	2789	30	19	14	35	1.92
54435--54495	19	3.3	18	88	2	59	52	11	1	34	1.47
54447--54495	19	2.6	19	96	0	89	55	10	2	32	1.45
56289--56354	33	2.0	33	87	0	96	22	48	1	27	1.59
56388--56452	21	3.1	21	93	0	103	16	30	10	41	1.83
58677--58723	20	2.4	19	82	10	67	19	17	10	53	1.72
58858--58904	20	2.4	19	79	10	58	21	17	8	53	1.70
58644--59116	181	2.6	182	89	1	689	27	16	13	42	1.86
59270--59302	11	3.0	11	100	0	66	27	18	18	36	1.94
60961--61053	21	4.6	20	78	4	96	38	18	24	18	1.92
60958--61053	41	2.3	41	98	0	183	39	17	23	18	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60961--61053	20	4.6	20	78	4	96	38	18	24	18	1.92
60980--61114	41	3.3	41	81	6	123	37	20	21	20	1.94
61042--61136	20	4.7	20	80	2	91	34	24	17	23	1.96
61324--61365	21	2.0	21	90	4	68	23	40	14	21	1.90
61605--61648	20	2.2	20	87	0	61	11	18	20	50	1.77
62967--63011	18	2.5	18	85	0	63	26	42	15	15	1.87
63485--63540	20	2.8	20	83	2	69	37	23	23	16	1.93
63540--63597	14	3.9	14	77	16	62	48	24	17	10	1.78
63524--63616	32	2.8	33	90	3	152	47	21	18	12	1.82
63645--63749	19	5.5	19	77	8	81	16	20	22	40	1.91
63656--63729	39	1.9	38	88	2	112	14	24	22	37	1.92
65587--65622	14	2.6	14	90	0	54	30	0	22	47	1.52
65780--65830	20	2.5	20	93	0	84	19	23	23	33	1.97
66196--66231	14	2.6	14	90	0	54	30	0	22	47	1.52
66349--66387	18	2.2	18	90	0	60	53	15	15	15	1.73
66439--66489	20	2.5	20	93	0	84	19	23	23	33	1.97
67758--67855	19	5.7	19	69	22	90	43	19	24	12	1.85
67758--67851	33	2.8	33	98	0	179	43	19	24	12	1.85
67851--67893	20	2.2	20	87	4	61	16	18	23	41	1.89
68034--68070	14	2.6	14	91	0	65	45	24	0	29	1.53
69428--69494	21	3.2	21	68	4	55	19	20	35	23	1.95
69428--69550	42	2.9	41	80	7	113	22	17	36	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71549--71728	19	9.8	19	73	14	119	44	21	21	12	1.85
71644--71733	19	4.7	19	93	2	153	45	22	20	12	1.83
71549--71733	33	5.1	38	79	10	156	43	21	21	12	1.86
71729--71773	19	2.4	19	92	0	72	8	15	26	48	1.74
72327--72420	20	4.7	20	77	2	80	23	17	24	35	1.95
72409--72504	41	2.3	41	98	0	147	18	23	17	39	1.92
72409--72501	20	4.6	20	78	4	96	18	24	18	38	1.92
74413--74555	35	4.0	35	90	3	196	19	40	13	25	1.89
74624--74671	20	2.4	20	96	0	87	16	0	45	37	1.48
74750--74830	20	4.2	20	81	6	87	67	0	29	2	1.03
74756--74857	20	4.9	20	76	13	75	67	0	28	3	1.08
74749--74823	3	25.7	3	75	17	61	66	0	30	2	1.05
77446--77752	93	3.4	92	94	2	532	46	4	21	27	1.69
90109--90415	153	2.0	153	98	1	589	46	15	12	25	1.82
91315--91371	26	2.1	27	93	3	98	26	15	21	36	1.93
91453--91505	21	2.5	22	85	11	67	43	1	0	54	1.11
91749--91899	80	1.9	80	84	0	203	24	23	19	32	1.98
95471--95628	64	2.5	63	83	7	176	35	17	20	27	1.94
96089--96306	103	2.1	103	96	0	409	24	13	24	37	1.92
96331--96384	23	2.3	23	87	6	74	20	22	25	31	1.98
98138--98170	15	2.2	15	94	0	57	9	69	15	6	1.34
102030--102059	11	2.7	11	94	0	51	16	23	0	60	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105749--105789	13	3.2	13	82	0	55	60	2	0	36	1.10
106530--107048	259	2.0	259	99	0	1020	39	14	12	33	1.84
113368--113523	59	2.6	59	78	9	154	32	19	4	43	1.71
114895--114958	27	2.3	27	97	2	119	40	9	10	39	1.73
114895--114966	27	2.6	27	91	4	90	38	9	12	38	1.76
117418--117475	19	3.0	19	82	7	73	0	17	0	82	0.66
117418--117460	10	4.4	10	91	2	61	0	13	0	86	0.58
121085--121137	28	1.9	27	84	3	70	62	7	1	28	1.33
123245--123288	18	2.4	18	85	10	63	68	0	4	27	1.09
123315--123358	19	2.4	19	88	3	63	72	0	6	20	1.07
124021--124133	19	5.8	19	66	20	56	56	14	0	29	1.38
124033--124142	24	4.3	24	65	20	71	58	13	0	28	1.36
124033--124080	25	2.0	24	83	4	60	60	14	0	25	1.34
123956--124178	78	3.0	76	79	11	248	56	12	0	30	1.42
125866--125910	16	2.9	16	83	3	56	75	2	8	13	1.13
125861--125928	21	3.2	20	79	10	73	73	4	7	14	1.21
130649--130867	76	3.0	73	83	8	266	57	11	0	30	1.40
131460--131498	18	2.2	18	90	0	60	51	30	12	5	1.62
144339--144383	23	2.0	23	95	0	81	40	20	8	31	1.83
144503--144547	20	2.2	20	92	0	72	57	15	11	15	1.64
144512--144556	20	2.2	20	88	0	72	62	13	11	13	1.55
146816--146936	28	4.2	28	95	3	206	54	0	0	44	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146816--147000	15	12.4	14	73	20	144	53	1	1	44	1.14
146815--146967	56	2.9	51	85	12	188	52	0	0	46	1.10
146953--147015	31	2.0	31	90	6	101	53	3	3	39	1.33
146960--147006	24	1.9	25	82	4	60	55	4	2	38	1.31
146852--147087	79	3.0	81	78	13	221	51	2	2	43	1.30
147068--147109	22	2.0	21	90	9	68	50	9	4	35	1.56
147111--147155	13	3.5	13	87	0	63	44	2	6	46	1.42
147126--147197	33	2.2	33	92	0	117	48	2	6	41	1.44
147126--147250	33	4.0	31	80	12	116	53	1	5	39	1.34
147207--147256	6	8.3	6	100	0	100	66	0	0	34	0.92

Tables:   1   2