genome.fa.s4170.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004170.1 Hibiscus syriacus cultivar Beakdansim tig00009125_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116930

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1958--2035	23	3.4	23	89	0	120	30	35	17	15	1.91
3879--3921	12	4.1	11	83	16	56	41	2	0	55	1.12
3879--3921	22	2.2	20	84	16	54	41	2	0	55	1.12
6467--6506	16	2.5	16	95	0	71	40	7	20	32	1.80
8556--8585	13	2.2	13	94	5	51	76	0	23	0	0.78
12246--12324	6	13.2	6	71	0	59	58	13	22	5	1.55
12248--12292	12	3.8	12	87	0	72	60	15	22	2	1.46
12249--12322	30	2.5	31	84	4	98	59	13	21	5	1.54
13987--14042	15	3.8	15	73	17	55	35	1	0	62	1.06
15603--15647	17	2.6	17	92	0	72	31	31	6	31	1.83
20886--21214	131	2.5	130	80	5	360	33	17	16	32	1.92
21775--21851	32	2.5	30	76	14	75	42	0	7	49	1.31
21811--21891	26	3.1	25	75	20	67	45	0	7	46	1.31
21832--21912	29	2.7	30	79	9	94	46	0	7	45	1.31
21821--21874	22	2.4	22	82	14	58	44	0	5	50	1.25
22934--23635	215	3.3	215	93	2	1207	51	7	12	28	1.66
23717--23760	2	22.0	2	100	0	88	50	0	0	50	1.00
23849--23886	11	3.5	11	88	0	58	50	2	2	44	1.30
23930--23992	22	2.8	22	83	7	74	42	1	6	49	1.37
24134--24170	13	2.8	13	87	0	56	48	8	5	37	1.56
24117--24226	24	4.2	24	69	14	69	41	8	8	41	1.64
24221--24269	18	2.8	17	78	9	53	48	4	2	44	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24266--24342	31	2.7	28	88	8	102	37	6	5	50	1.51
24334--24535	18	11.4	18	70	20	106	40	8	6	44	1.62
24348--24389	20	2.1	20	82	8	50	45	9	2	42	1.49
24397--24532	53	2.5	53	85	8	177	39	8	8	43	1.65
24402--24535	38	3.7	36	80	14	150	39	8	7	44	1.64
24468--24659	57	3.2	59	76	13	160	41	8	6	43	1.61
24402--24586	18	9.9	20	70	24	113	40	9	7	42	1.65
24561--24610	24	2.1	24	85	7	66	38	8	10	44	1.68
24644--24747	27	3.9	27	94	0	190	33	9	7	49	1.64
24841--24896	19	2.7	20	76	17	60	48	5	1	44	1.36
24870--25153	33	8.7	33	74	16	234	44	6	7	41	1.59
24868--25065	18	11.6	18	69	18	120	43	6	8	41	1.60
24868--25033	51	3.2	51	87	5	253	45	6	7	41	1.56
24923--25150	91	2.6	87	85	10	295	43	7	7	41	1.61
25042--25090	25	2.0	25	91	0	80	42	6	8	42	1.59
25702--25921	113	1.9	113	85	7	304	30	27	6	35	1.82
26061--26168	6	18.5	6	74	5	87	44	45	3	6	1.47
26091--26168	11	6.8	11	79	1	66	47	44	3	3	1.39
26067--26169	17	5.9	18	79	10	79	44	44	3	6	1.48
26387--26433	2	23.5	2	100	0	94	51	0	0	48	1.00
28823--28907	20	4.2	20	95	0	143	14	10	16	58	1.62
28817--28892	10	7.6	10	70	16	59	11	7	18	61	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32927--32967	21	2.0	21	85	0	55	53	24	2	19	1.57
32936--32983	21	2.3	21	92	7	80	47	25	0	27	1.52
36023--36213	95	2.0	95	90	0	301	37	15	20	26	1.92
36652--36749	20	4.6	20	78	16	115	42	10	27	19	1.83
43150--43339	94	2.0	94	83	3	238	37	15	21	26	1.92
43761--44024	47	5.6	47	89	1	386	43	10	22	23	1.84
43771--43976	27	8.8	24	68	24	102	43	10	23	22	1.84
48378--48515	41	3.4	41	82	0	159	36	15	17	29	1.91
48654--48819	40	4.1	41	74	9	128	39	16	15	27	1.89
48701--48936	81	3.0	78	71	14	198	37	15	16	30	1.90
53139--53187	4	12.2	4	91	0	71	26	22	0	51	1.49
54200--54238	20	2.1	19	85	9	53	28	15	25	30	1.96
57264--57313	2	25.0	2	100	0	100	50	0	0	50	1.00
58513--59579	45	23.7	45	76	5	428	42	18	15	23	1.89
58444--59579	135	8.4	135	78	4	932	42	18	16	22	1.89
58489--59580	180	6.1	180	80	3	975	42	18	15	22	1.89
61024--61108	44	1.9	44	92	0	143	34	18	11	35	1.88
63600--63624	4	6.2	4	100	0	50	76	0	0	24	0.80
66951--67004	26	2.1	26	83	13	67	50	11	3	35	1.56
67114--67446	75	4.4	75	87	0	443	40	12	13	33	1.82
67114--67590	150	3.2	149	82	7	476	40	13	13	33	1.83
67429--67515	23	3.8	23	92	0	138	35	20	11	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67346--67616	144	1.9	144	89	1	427	38	14	13	33	1.85
67444--67685	121	2.0	121	85	0	322	40	13	12	33	1.82
67565--67636	23	3.1	22	84	7	90	36	9	13	40	1.78
69375--69409	17	2.1	17	100	0	70	45	17	0	37	1.48
69888--69925	2	19.0	2	100	0	76	50	0	0	50	1.00
72774--72808	10	3.4	10	88	7	52	74	0	8	17	1.06
73335--73535	108	1.9	107	87	1	294	50	5	4	39	1.46
73585--73628	18	2.5	18	85	3	54	56	20	9	13	1.64
76649--76688	20	2.0	20	100	0	80	15	15	20	50	1.79
80636--80707	29	2.5	29	95	2	128	22	18	5	54	1.64
82523--82555	2	16.0	2	93	6	57	48	0	3	48	1.17
88618--88759	74	1.9	75	82	5	178	45	6	8	39	1.60
89384--89415	5	6.8	5	96	3	50	0	34	0	65	0.93
93441--93489	20	2.5	20	86	0	62	26	10	14	48	1.75
93493--93560	15	4.5	15	90	0	91	32	17	20	29	1.96
94567--94733	35	4.8	35	79	8	146	29	17	19	32	1.95
103386--103425	4	10.2	4	94	5	73	25	0	0	75	0.81
103610--103657	15	3.2	15	81	0	51	25	4	6	64	1.35
109582--110129	98	5.4	102	78	9	486	33	15	12	39	1.84
109582--110089	103	5.0	100	77	10	396	33	15	12	39	1.84
110464--110850	136	2.8	134	87	3	524	34	17	21	26	1.95
111093--111130	3	12.7	3	83	10	51	36	0	2	60	1.11

Tables:   1

The End!