Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004177.1 Hibiscus syriacus cultivar Beakdansim tig00009134_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51530

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1270--1333
24
2.7
24
80
0
74
28
20
15
35
1.93
1278--1368
24
3.8
24
73
11
78
28
20
15
35
1.93
2921--2963
21
2.0
21
100
0
86
39
9
23
27
1.85
5131--5236
23
4.7
23
78
17
89
28
23
24
23
2.00
5132--5260
45
2.9
44
79
12
138
31
24
21
23
1.99
10449--10507
21
2.7
21
82
10
66
32
25
18
23
1.97
10451--10528
23
3.5
23
82
6
81
32
23
21
23
1.98
10524--10565
21
2.0
21
90
0
66
35
30
16
16
1.92
10530--10573
21
2.1
21
86
0
61
40
22
15
20
1.90
13512--13569
20
2.8
22
75
20
70
27
29
13
29
1.94
18435--19017
200
2.9
199
91
0
932
31
15
13
39
1.86
19253--19304
15
3.3
15
77
15
52
61
3
13
21
1.48
23184--23216
13
2.6
13
95
4
59
12
18
18
51
1.76
26012--26657
183
3.5
183
90
1
1008
27
14
14
43
1.84
32189--32260
29
2.4
30
81
4
92
22
11
5
61
1.50
32204--32344
30
4.7
29
74
10
70
18
11
11
58
1.61
32267--32342
30
2.6
28
79
10
71
14
9
11
64
1.49
35333--35371
21
1.9
20
89
5
60
35
17
15
30
1.91
50005--50067
32
2.0
32
84
6
83
26
12
26
33
1.93
50373--50431
30
1.9
32
89
6
95
30
20
11
37
1.89
51049--51084
3
12.3
3
94
5
65
33
0
0
66
0.92

Tables:   1

The End!