genome.fa.s419.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000419.1 Hibiscus syriacus cultivar Beakdansim tig00000766_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  196632

Tables:   1   2   

This is table  1  of  2  ( 125 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2427--2559	67	2.0	69	87	3	198	36	13	18	31	1.90
7973--8285	99	3.2	99	96	0	563	21	17	17	43	1.88
11122--11289	43	3.9	42	82	6	176	50	4	20	24	1.67
19879--19912	17	1.9	18	88	5	52	14	11	2	70	1.27
20348--20382	2	17.5	2	87	0	52	0	42	2	54	1.15
33975--34031	28	2.0	28	86	6	80	33	22	17	26	1.96
34342--34383	14	2.7	16	82	14	52	38	2	4	54	1.34
34418--34453	18	2.0	18	88	0	54	66	0	0	33	0.92
36747--36833	29	3.0	29	87	0	129	17	39	27	16	1.90
36842--36917	10	7.3	10	76	19	75	22	50	18	9	1.75
36812--36907	40	2.3	40	82	12	106	21	48	16	12	1.79
36838--36937	30	3.6	30	80	18	142	23	50	17	10	1.75
36852--36913	23	2.8	22	90	7	92	22	48	19	9	1.78
36865--36903	13	3.2	13	79	20	57	23	46	17	12	1.83
37575--37618	21	2.1	21	91	0	70	29	0	15	54	1.42
37602--37655	28	1.9	28	96	0	99	33	0	12	53	1.39
38567--38747	14	13.3	14	74	19	107	42	2	7	48	1.43
38558--38724	11	13.8	11	70	21	61	41	1	8	47	1.44
38587--38717	47	2.8	46	84	4	163	41	2	6	48	1.42
38711--38766	20	3.0	20	80	12	66	46	3	7	42	1.48
39637--39755	14	8.3	14	76	18	102	46	6	3	43	1.46
39660--39826	14	13.8	11	68	23	61	47	8	1	41	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39618--39853	61	3.9	62	70	17	181	47	8	1	42	1.44
39620--39826	47	4.3	49	77	10	169	47	8	1	42	1.44
39714--39817	14	8.1	13	75	16	67	50	6	1	41	1.40
40737--40789	28	1.9	28	96	3	99	54	11	0	33	1.36
40736--40796	28	2.2	27	88	2	95	54	13	0	32	1.39
40773--40821	21	2.3	21	85	3	71	53	16	0	30	1.43
41458--41496	13	3.2	13	79	20	57	12	17	46	23	1.83
41454--41509	23	2.6	21	91	8	87	10	16	50	23	1.76
41454--41519	10	6.3	10	74	22	64	10	16	50	22	1.76
41530--41645	29	4.0	29	90	0	169	16	28	38	16	1.90
41528--41643	58	2.0	58	91	0	187	16	26	39	17	1.90
45023--45081	24	2.5	24	82	0	73	38	16	13	30	1.88
45814--45972	28	5.6	28	71	8	117	40	21	6	31	1.78
45821--45994	29	6.1	29	69	13	103	41	21	6	31	1.78
45843--46000	84	1.9	84	81	7	196	40	22	6	31	1.79
52281--52339	24	2.5	24	82	0	73	38	16	13	30	1.88
53049--53117	29	2.3	30	82	5	86	46	24	2	26	1.67
53070--53236	29	5.7	28	71	10	111	43	21	5	29	1.75
58159--58191	2	16.5	2	100	0	66	48	0	0	51	1.00
61009--61124	41	2.8	40	83	3	142	35	20	19	24	1.96
61031--61124	20	4.7	20	89	2	143	37	19	21	22	1.95
61626--61751	33	3.8	33	88	1	153	44	22	21	11	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61665--61721	19	3.3	19	72	23	70	45	22	22	8	1.80
61676--61733	14	3.8	14	73	20	53	46	20	22	10	1.81
61626--61751	66	1.9	67	85	1	173	44	22	21	11	1.84
61769--61825	14	3.7	14	75	20	60	10	22	24	42	1.85
61752--61878	33	3.8	33	87	3	175	11	22	22	44	1.85
61747--61840	19	5.5	19	65	23	73	10	23	22	43	1.84
62860--63005	19	7.8	19	74	10	131	11	20	20	47	1.81
62860--62981	33	3.3	38	83	6	119	10	21	21	46	1.81
64816--64849	14	2.5	14	85	4	52	44	0	14	41	1.45
64938--65003	19	3.7	19	76	19	79	45	21	22	10	1.82
65013--65139	33	3.8	33	92	0	200	12	22	18	47	1.81
65048--65159	19	6.4	19	70	20	91	14	22	18	44	1.86
65123--65166	20	2.3	19	88	4	61	20	22	20	36	1.95
65133--65205	20	3.6	19	70	17	58	24	19	24	31	1.98
67689--67735	24	2.0	24	95	0	85	34	17	21	27	1.95
67693--67744	24	2.2	24	85	0	68	36	19	19	25	1.95
68605--68761	21	7.7	21	84	6	180	40	15	22	21	1.90
73456--73504	26	2.0	25	88	8	73	36	6	0	57	1.24
76634--76955	4	80.5	4	96	0	563	47	24	2	25	1.63
82825--82862	20	1.9	20	94	0	67	42	0	0	57	0.98
82889--82931	19	2.2	20	91	4	70	72	2	0	25	0.97
86892--86932	2	20.5	2	100	0	82	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95050--95170	62	2.0	61	83	4	154	17	26	28	28	1.98
99887--100045	63	2.5	62	86	2	201	30	19	22	27	1.98
101419--101734	151	2.1	148	88	4	474	26	16	21	35	1.94
101702--101746	23	2.0	23	90	0	72	22	26	26	24	2.00
102698--102743	23	2.0	23	91	0	74	45	2	6	45	1.41
107451--107505	21	2.6	21	80	5	58	30	16	1	50	1.55
107691--107751	23	2.7	23	92	2	97	24	26	27	21	1.99
109306--109464	63	2.5	62	85	6	196	25	23	19	31	1.98
109432--109469	19	2.0	20	94	5	69	26	28	15	28	1.96
113039--113082	21	2.1	21	83	8	54	34	18	0	47	1.49
114837--114995	63	2.5	62	83	6	187	25	23	19	30	1.98
114963--115000	19	2.0	20	94	5	69	26	28	15	28	1.96
118971--119001	2	16.0	2	93	6	55	51	0	0	48	1.00
119029--119110	15	5.7	15	73	11	64	43	6	8	41	1.60
119038--119094	13	4.2	13	80	8	69	43	5	7	43	1.54
119042--119098	26	2.1	26	87	6	78	45	5	5	43	1.49
119006--119109	28	3.5	28	73	15	77	44	5	6	43	1.54
119294--119333	14	2.8	14	88	3	62	42	32	0	25	1.55
119285--119332	21	2.3	21	78	7	53	41	33	0	25	1.55
119356--119395	20	2.0	20	100	0	80	45	5	10	40	1.60
119843--119867	2	12.5	2	100	0	50	52	0	0	48	1.00
121786--121826	7	5.9	7	82	0	55	41	36	0	21	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121774--121825	14	3.7	14	78	0	59	44	30	0	25	1.54
121989--122068	18	4.3	19	87	4	74	50	2	3	43	1.33
122023--122087	2	32.0	2	90	3	103	47	1	3	47	1.27
122128--122218	21	4.3	20	70	16	58	39	6	6	47	1.56
122143--122245	22	4.8	21	76	9	75	37	6	7	47	1.59
122261--122364	21	4.8	21	71	16	77	47	4	1	46	1.35
122352--122414	31	2.0	31	90	0	99	41	1	3	53	1.26
122429--122477	21	2.3	20	83	16	64	46	0	2	51	1.12
122429--122509	6	15.2	6	71	26	51	48	0	1	50	1.08
122418--122509	24	4.1	23	77	15	86	48	1	1	48	1.15
122707--122760	23	2.3	24	93	3	92	48	11	0	40	1.39
122997--123025	15	1.9	15	100	0	58	41	0	20	37	1.53
123059--123110	16	3.2	16	77	0	59	36	17	21	25	1.94
129605--129638	18	1.9	18	88	5	52	29	20	0	50	1.49
133709--133767	12	4.7	13	76	12	52	64	3	5	27	1.30
138367--139691	323	4.2	318	84	5	1682	28	14	17	38	1.90
138367--139691	641	2.1	631	85	5	1767	28	14	17	38	1.90
143943--143994	23	2.3	23	96	0	95	11	21	23	44	1.84
143526--144781	319	3.8	317	78	10	1141	28	15	17	38	1.90
146811--147156	169	2.0	169	98	0	665	23	19	19	37	1.94
151080--152730	323	5.1	323	85	3	2052	29	14	17	38	1.89
151080--152730	638	2.6	640	84	4	2157	29	14	17	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151080--152730	319	5.1	317	84	4	1919	29	14	17	38	1.89
153190--153236	24	2.0	24	86	0	67	36	8	17	38	1.80
155915--155985	34	2.0	35	86	5	99	35	9	15	39	1.81
158115--158193	38	2.1	38	100	0	158	39	5	8	46	1.57
159523--159548	12	2.2	12	100	0	52	19	0	38	42	1.51
159789--160312	200	2.6	196	84	5	642	38	12	15	32	1.86
160389--160447	23	2.6	23	88	0	91	33	18	6	40	1.77
160313--160475	87	1.9	87	92	0	272	31	14	11	42	1.81
161366--161429	23	2.8	23	68	17	60	42	4	7	45	1.54
164594--164636	22	2.0	22	95	0	77	11	23	46	18	1.82

Tables:   1   2