genome.fa.s4214.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004214.1 Hibiscus syriacus cultivar Beakdansim tig00009230_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  290190

Tables:   1   2   

This is table  1  of  2  ( 166 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
316--354	20	2.0	20	100	0	78	33	10	15	41	1.81
356--397	21	2.0	20	86	4	57	40	7	14	38	1.73
7488--7590	5	20.6	5	100	0	206	39	0	0	60	0.97
8107--8133	2	13.5	2	100	0	54	48	0	0	51	1.00
9376--9412	11	3.3	11	92	3	56	86	0	2	10	0.67
9369--9412	10	4.1	10	85	11	52	84	0	2	13	0.73
10254--10278	2	12.5	2	100	0	50	48	0	0	52	1.00
12584--12624	21	1.9	22	90	5	66	46	2	4	46	1.37
12657--12686	3	10.0	3	100	0	60	66	0	0	33	0.92
16058--16187	65	2.0	65	96	1	244	16	16	21	45	1.85
21161--21203	14	3.1	14	77	12	52	46	4	0	48	1.22
27236--27267	15	2.1	15	100	0	64	25	31	25	18	1.98
33863--33946	24	3.4	24	64	22	57	32	17	8	41	1.80
36006--36062	23	2.5	23	82	2	62	10	3	21	64	1.39
36064--36093	10	3.0	10	95	0	51	6	10	23	60	1.52
41959--42046	42	2.1	42	89	4	133	15	39	12	31	1.85
42110--42150	21	2.0	21	100	0	82	24	24	24	26	2.00
48056--48254	55	3.6	55	83	6	224	32	23	15	29	1.95
48058--48611	51	10.6	56	92	2	250	28	25	15	30	1.96
48165--48626	51	9.0	51	95	0	780	27	27	15	30	1.96
49945--50022	8	9.6	8	73	9	61	3	14	1	80	0.91
49945--50025	22	3.5	22	81	8	90	3	13	1	81	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49940--50034	23	4.2	22	76	14	86	4	13	2	80	0.96
49940--49978	15	2.7	14	88	7	60	7	10	0	82	0.86
59730--59826	44	2.1	47	90	7	155	41	20	10	27	1.85
66193--66256	20	3.2	20	97	2	119	23	28	26	21	1.99
68107--68150	20	2.1	21	87	4	63	25	27	22	25	2.00
73460--73486	14	1.9	14	100	0	54	25	0	22	51	1.48
77198--77447	125	2.0	125	100	0	500	28	15	16	40	1.88
82459--82496	14	2.6	15	83	4	51	68	0	2	28	1.03
82748--82789	14	2.9	16	76	23	56	61	0	0	38	0.96
83824--83849	11	2.4	11	100	0	52	42	0	30	26	1.56
83972--84090	59	2.0	59	100	0	238	41	6	25	26	1.80
91670--91707	16	2.3	17	90	4	60	34	23	21	21	1.97
92133--92163	16	1.9	16	93	0	53	54	3	9	32	1.49
100727--100796	11	6.1	11	71	21	54	27	20	25	27	1.99
103114--103149	19	1.9	19	88	5	56	27	5	8	58	1.50
103539--103591	21	2.5	22	82	11	58	24	0	24	50	1.49
105706--105795	20	4.5	20	75	14	78	41	20	18	20	1.91
105726--105817	40	2.3	40	90	0	121	42	18	16	22	1.89
105729--105816	20	4.4	20	75	0	77	42	18	17	22	1.89
105863--105904	20	2.1	20	95	0	75	35	16	26	21	1.94
105766--106199	152	2.9	145	83	8	577	36	20	16	27	1.93
105915--105961	20	2.3	20	88	0	67	40	21	19	19	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105955--106003	14	3.5	14	94	0	80	32	28	10	28	1.90
105955--106010	28	2.0	28	85	0	76	32	26	10	30	1.90
106077--106114	20	1.9	20	88	0	58	47	15	15	21	1.82
106169--106222	20	2.7	20	85	0	72	37	14	25	22	1.93
106273--106322	20	2.5	20	90	0	73	18	18	20	44	1.88
109031--109097	34	2.0	34	90	0	107	44	1	17	35	1.58
109751--109862	36	3.2	36	63	23	92	17	9	15	57	1.65
109736--109921	70	2.7	70	94	1	311	17	11	16	54	1.71
109783--109895	36	3.2	36	64	22	94	16	11	15	56	1.67
118019--118047	12	2.3	13	94	5	51	55	3	0	41	1.17
118017--118048	13	2.4	14	85	15	50	56	3	0	40	1.15
118278--118330	27	2.0	26	85	3	70	37	1	1	58	1.20
118513--118550	2	19.5	2	94	5	69	47	0	0	52	1.00
118606--118643	18	2.2	17	86	9	51	63	0	2	34	1.09
119823--119875	3	18.0	3	78	18	58	67	0	0	32	0.91
119823--119890	22	3.0	22	80	14	75	70	0	0	29	0.87
119825--119885	19	3.2	20	78	21	69	70	0	0	29	0.88
123621--123652	11	2.8	11	95	4	55	43	0	0	56	0.99
123648--123694	3	15.7	3	100	0	94	65	0	0	34	0.93
124009--124998	117	8.6	115	88	3	1383	29	20	12	37	1.89
124009--124998	346	2.9	346	96	1	1794	29	20	12	37	1.89
125747--126225	83	5.7	84	92	4	781	35	24	13	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125747--126212	167	2.8	167	96	1	839	35	24	13	26	1.93
127370--127438	20	3.5	20	86	7	95	1	10	0	88	0.58
127370--127423	1	54.0	1	84	0	72	0	7	0	92	0.38
127377--127438	10	6.0	10	92	3	97	1	9	0	88	0.58
138082--138135	19	2.8	19	74	23	51	62	1	5	29	1.28
140253--140284	11	2.8	11	95	4	55	43	0	0	56	0.99
140280--140373	3	31.7	3	97	2	181	65	0	0	34	0.93
142676--142736	31	2.0	31	86	0	86	16	16	14	52	1.75
143562--143669	47	2.3	47	98	0	207	19	20	23	37	1.95
143651--143736	32	2.7	32	92	0	145	8	24	32	34	1.85
143875--143973	51	2.0	50	86	9	141	43	15	18	23	1.87
145667--145988	14	24.8	14	69	18	207	40	4	5	49	1.46
145681--145807	23	5.7	22	75	15	93	41	4	4	48	1.45
145663--145997	37	9.0	37	79	13	218	41	4	5	48	1.45
145715--145977	51	5.3	51	74	17	236	41	4	4	49	1.45
145678--145844	88	1.9	88	100	0	334	41	4	4	49	1.43
145657--145894	8	30.9	8	61	23	57	41	4	4	50	1.42
145720--145807	23	3.6	23	85	14	131	42	4	4	48	1.44
145845--145920	23	3.1	23	81	17	98	43	3	3	48	1.40
145663--145997	125	2.6	127	91	5	532	41	4	5	48	1.45
147822--148082	37	6.8	37	89	6	330	50	4	3	40	1.41
147765--148123	121	2.9	120	86	7	477	49	5	4	40	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147808--148043	79	3.0	79	89	8	374	50	5	3	40	1.41
147822--148129	8	41.9	8	62	23	63	50	4	3	40	1.42
147943--148123	97	1.9	96	96	1	335	49	4	3	41	1.42
147728--148119	14	29.8	14	72	16	313	49	5	4	40	1.45
149810--149908	51	2.0	48	86	9	137	23	18	15	43	1.87
150047--150132	32	2.7	32	94	0	154	34	32	25	6	1.83
150114--150221	47	2.3	47	96	3	200	37	22	21	19	1.95
153142--153192	4	13.0	4	78	12	52	27	3	0	68	1.07
153147--153215	27	2.6	27	86	9	88	26	4	1	68	1.17
157494--157608	46	2.5	47	92	2	189	31	2	8	57	1.43
158606--158654	2	24.5	2	100	0	98	51	0	0	48	1.00
158812--158920	24	4.5	24	75	6	96	51	17	11	19	1.76
158812--158926	48	2.4	47	82	7	133	52	16	11	20	1.74
162149--162483	169	2.0	167	97	2	636	25	15	16	42	1.88
173310--173339	11	2.7	11	94	0	51	63	10	13	13	1.52
174003--174075	31	2.4	31	79	9	87	21	21	12	43	1.85
188640--188668	3	9.7	3	100	0	58	34	0	0	65	0.93
191251--191298	24	1.9	26	87	8	73	39	10	18	31	1.85
192014--192056	21	2.2	19	87	8	59	20	9	18	51	1.74
193429--193534	37	2.7	37	87	10	133	50	5	12	31	1.63
196636--196691	3	18.3	3	81	3	67	62	1	0	35	1.06
196639--196692	28	1.9	28	88	0	81	61	1	0	37	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
197244--197657	45	9.3	45	72	6	256	37	18	18	24	1.93
197672--197916	37	6.6	36	72	10	181	48	14	14	22	1.80
197673--197916	74	3.3	74	81	2	240	48	14	14	22	1.80
203223--203248	2	13.0	2	100	0	52	50	0	0	50	1.00
203272--203301	13	2.3	13	100	0	60	60	0	6	33	1.23
203838--203879	22	1.9	22	85	9	59	52	7	11	28	1.64
206125--206158	18	1.9	17	88	5	50	20	5	14	58	1.57
209017--209108	43	2.1	43	85	0	121	27	18	25	29	1.98
209036--209118	43	1.9	43	87	0	121	28	16	24	30	1.97
209124--209292	44	3.9	44	76	2	153	27	14	23	34	1.93

Tables:   1   2