genome.fa.s4214.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004214.1 Hibiscus syriacus cultivar Beakdansim tig00009230_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  290190

Tables:   1   2   

This is table  2  of  2  ( 166 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
219483--219579	42	2.4	41	80	11	101	29	20	18	30	1.97
220254--220300	20	2.3	20	85	0	58	36	12	19	31	1.89
223500--223589	28	3.2	28	85	0	117	35	24	18	21	1.96
228546--228610	28	2.3	28	81	0	76	38	24	20	16	1.93
229044--229081	2	19.0	2	100	0	76	50	0	0	50	1.00
234242--234344	44	2.3	44	80	5	118	20	21	32	26	1.98
238897--238990	39	2.4	39	98	0	161	28	20	28	22	1.98
239067--239093	13	2.1	13	100	0	54	22	0	7	70	1.12
239276--239393	60	2.0	60	91	0	191	20	11	11	57	1.63
241705--241758	20	2.7	20	94	0	90	27	24	33	14	1.94
242867--242902	12	3.0	12	100	0	72	66	0	0	33	0.92
242860--242902	12	3.4	14	93	6	58	65	0	0	34	0.93
243616--243641	12	2.2	12	100	0	52	7	7	23	61	1.49
244348--244398	3	16.7	3	91	4	57	56	0	0	43	0.99
244725--245470	113	6.6	113	93	1	1196	29	19	13	37	1.90
244725--245475	225	3.3	225	93	1	1220	29	19	13	37	1.90
246262--246929	83	8.0	83	95	0	1142	34	23	14	27	1.93
248081--248124	9	4.9	9	89	8	63	0	13	0	86	0.57
248087--248121	10	3.5	10	92	7	54	0	11	0	88	0.51
248087--248124	19	2.0	19	94	0	67	0	13	0	86	0.56
259335--259374	14	3.1	13	82	10	55	60	0	0	40	0.97
260338--260399	22	2.8	22	74	16	65	0	22	11	66	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
260818--260863	3	15.3	3	95	0	83	63	0	0	36	0.95
261644--261706	28	2.3	25	75	21	63	57	1	0	41	1.08
261673--261729	22	2.5	23	73	21	57	49	3	0	47	1.18
262917--262963	12	3.9	12	100	0	94	25	8	40	25	1.84
265045--265118	24	3.1	24	84	0	94	37	21	27	13	1.91
280616--280743	23	5.7	23	94	3	217	38	26	9	25	1.86
280616--280743	68	1.9	66	93	3	220	38	26	9	25	1.86
280616--280743	45	2.8	45	92	4	206	38	26	9	25	1.86
280825--280874	19	2.5	20	83	3	57	60	14	12	14	1.60
280873--280906	18	1.9	17	94	5	59	50	17	8	23	1.74
283426--283497	17	4.1	17	78	5	81	12	6	37	43	1.70
283419--283525	35	3.5	29	78	14	85	11	6	38	43	1.66
283879--284068	101	1.9	102	94	2	337	30	8	29	32	1.87
284316--284415	28	3.4	29	67	23	82	37	10	5	48	1.59
284276--284415	61	2.3	60	88	2	201	37	10	5	45	1.63
284523--284553	13	2.4	13	100	0	62	41	6	0	51	1.27
284523--284561	13	3.0	13	92	0	51	41	5	2	51	1.38
284665--284698	18	1.9	18	88	5	52	44	0	11	44	1.40
284683--284756	28	2.7	27	89	4	112	47	6	5	40	1.53
284798--284833	18	2.0	18	88	0	54	50	0	5	44	1.25
284899--284972	24	3.1	24	96	3	132	43	10	4	41	1.58
284899--285002	24	4.6	23	82	14	128	42	8	3	45	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
285017--285142	2	61.0	2	67	22	57	43	4	4	46	1.45
285017--285142	9	15.2	8	67	21	57	43	4	4	46	1.45

Tables:   1   2

The End!