Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004221.1 Hibiscus syriacus cultivar Beakdansim tig00009241_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71803

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
409--448
21
1.9
21
84
0
53
40
2
5
52
1.37
5113--5180
19
3.7
19
84
7
88
35
11
11
41
1.78
5268--5317
17
2.8
18
84
6
75
44
14
8
34
1.74
5232--5313
17
4.7
17
79
5
67
37
17
8
36
1.80
9348--9400
22
2.4
22
100
0
106
41
5
26
26
1.78
12852--12877
2
13.0
2
100
0
52
50
0
0
50
1.00
16891--16930
15
2.7
15
80
0
53
42
37
17
2
1.63
22942--22973
16
2.0
16
100
0
64
31
25
12
31
1.92
45178--45236
29
2.0
30
90
3
93
42
6
15
35
1.73
51482--51516
15
2.3
15
100
0
70
14
22
34
28
1.93
57714--57753
21
2.0
21
95
5
73
10
30
32
27
1.89
58379--58428
15
3.3
15
100
0
100
14
24
34
28
1.93
60370--60630
95
2.7
95
87
3
346
31
18
17
32
1.95
60953--61011
26
2.3
26
100
0
118
22
15
13
49
1.79
64273--64315
22
2.0
22
86
4
61
60
0
11
27
1.31
64252--64311
29
2.1
29
84
6
77
63
1
10
25
1.35
64352--64419
23
3.0
22
74
17
59
66
1
17
14
1.33
64510--64570
2
30.5
2
100
0
122
50
0
0
49
1.00
66634--67787
83
13.8
83
82
3
1237
24
18
22
34
1.96
66634--67787
333
3.5
333
83
3
1342
24
18
22
34
1.96

Tables:   1

The End!