genome.fa.s4235.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004235.1 Hibiscus syriacus cultivar Beakdansim tig00009279_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56509

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5942--6003	22	3.0	21	83	4	81	24	35	24	16	1.95
7939--7979	16	2.7	15	85	7	55	17	0	24	58	1.38
11026--11113	23	3.9	23	76	11	92	27	25	21	26	1.99
13920--13962	20	2.0	20	82	13	50	34	30	9	25	1.87
20687--20735	23	2.1	23	92	0	80	30	24	20	24	1.98
23343--23396	21	2.6	21	81	0	63	16	27	31	24	1.96
25646--25719	27	3.0	23	78	17	78	44	18	13	22	1.85
25672--25734	27	2.3	27	100	0	126	44	17	11	26	1.82
29358--29416	27	2.2	26	93	3	100	38	11	16	32	1.86
35795--35871	38	2.0	38	97	0	145	38	9	29	22	1.85
36466--36511	2	23.0	2	100	0	92	50	0	0	50	1.00
38045--38082	2	19.0	2	100	0	76	50	0	0	50	1.00
38349--38383	2	17.5	2	100	0	70	48	0	0	51	1.00
39151--39260	54	2.0	54	89	0	166	33	15	20	30	1.94
39354--39407	25	2.2	23	83	12	63	53	3	0	42	1.18
40337--40381	19	2.4	18	82	7	54	46	2	4	46	1.35
44171--44269	39	2.6	38	86	9	148	22	11	14	52	1.72
45922--46162	43	5.7	43	82	5	229	23	15	26	34	1.95
45899--46121	43	5.2	42	80	5	180	25	14	25	34	1.94
45955--46163	42	4.9	42	82	4	168	24	16	25	33	1.96
45899--46164	85	3.1	85	78	4	214	24	15	25	34	1.95
46569--46620	20	2.5	21	84	6	70	1	36	21	40	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50702--50730	2	14.5	2	100	0	58	51	0	0	48	1.00
51550--51591	2	20.5	2	95	4	75	47	0	2	50	1.14

Tables:   1

The End!