genome.fa.s4246.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004246.1 Hibiscus syriacus cultivar Beakdansim tig00009314_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  187727

Tables:   1   

This is table  1  of  1  ( 120 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2300--2331	16	2.0	16	93	0	55	40	0	15	43	1.47
12008--12129	44	2.8	44	87	0	181	26	15	21	36	1.93
12008--12133	22	5.7	22	74	7	112	26	15	22	35	1.94
17046--17094	25	2.0	25	84	8	64	26	16	8	48	1.73
18465--18562	45	2.2	45	98	0	187	54	11	11	23	1.68
18673--18759	40	2.2	40	95	2	158	22	12	9	55	1.65
21435--21480	20	2.3	20	84	0	56	43	2	2	52	1.25
26594--26649	28	2.0	28	92	0	94	41	23	16	19	1.90
27653--27702	20	2.5	20	83	0	64	30	24	16	30	1.96
30407--30463	27	2.2	26	87	6	80	56	0	1	42	1.10
30450--30507	25	2.2	27	84	6	75	53	1	5	39	1.33
30762--30864	39	2.6	39	76	14	113	45	1	16	35	1.59
31264--31330	31	2.2	31	88	0	98	50	10	7	31	1.64
36625--36906	140	2.0	140	100	0	564	32	11	23	31	1.90
38680--39017	138	2.5	136	78	5	333	26	18	30	24	1.98
43425--43459	15	2.2	16	90	5	54	40	14	2	42	1.60
47976--48008	17	2.0	17	88	5	50	33	0	30	36	1.58
50764--50866	51	2.0	51	94	0	179	28	15	14	41	1.86
57175--57204	14	2.1	14	93	0	51	26	30	23	20	1.98
63568--64163	77	7.7	76	84	3	660	36	9	17	36	1.83
63756--63884	40	3.3	40	66	14	106	37	5	17	38	1.73
64262--64299	20	1.9	20	94	0	67	39	7	10	42	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64341--64380	20	2.0	20	85	4	55	32	20	10	37	1.85
64202--64535	154	2.1	157	82	7	387	39	9	10	40	1.72
64445--64600	84	1.9	84	83	5	208	36	7	7	49	1.57
64696--64763	6	11.5	6	92	1	111	33	16	1	48	1.55
65953--66043	39	2.4	38	87	5	123	39	8	17	34	1.81
66060--66352	77	3.8	76	81	3	327	34	16	10	38	1.83
66059--66351	153	1.9	154	84	0	390	34	16	10	38	1.83
67025--67108	42	2.0	42	97	0	159	42	15	14	27	1.85
71483--71584	22	4.8	21	77	11	66	19	24	32	23	1.98
71484--71567	22	3.8	23	82	6	102	20	25	30	23	1.98
76746--76945	56	3.6	56	87	1	294	39	16	17	27	1.90
79304--79354	3	17.3	3	80	11	61	33	0	0	66	0.92
79303--79345	17	2.6	16	88	3	68	32	0	0	67	0.91
84247--84316	31	2.3	31	100	0	140	32	8	10	48	1.67
86876--86921	19	2.4	19	96	0	83	41	17	2	39	1.62
86876--86927	19	2.7	19	83	16	72	40	15	1	42	1.58
87129--87174	2	23.0	2	100	0	92	50	0	0	50	1.00
87349--87381	17	1.9	17	88	11	50	63	3	0	33	1.10
87458--87493	17	2.2	16	90	5	54	41	0	0	58	0.98
89097--89195	20	4.9	20	98	0	171	32	20	19	28	1.97
89080--89195	40	2.9	40	90	2	180	31	22	18	28	1.97
89227--89277	20	2.5	20	84	9	59	31	27	11	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93809--93837	15	1.9	15	100	0	58	37	0	0	62	0.96
100184--100222	20	1.9	21	89	5	62	41	25	12	20	1.88
101269--101350	42	2.0	42	82	4	103	24	18	20	36	1.95
101518--101599	42	2.0	42	82	4	103	25	20	19	34	1.96
101839--101879	3	14.3	3	80	19	52	34	0	0	65	0.93
103284--103327	23	1.9	23	81	9	54	34	4	11	50	1.59
106400--106438	3	12.7	3	89	5	60	35	0	2	61	1.10
108319--108351	2	16.5	2	100	0	66	48	0	0	51	1.00
108569--108634	5	13.0	5	73	9	53	21	1	1	75	0.96
108566--108616	16	3.2	16	81	8	61	21	0	0	78	0.75
108563--108612	24	2.0	26	88	11	77	24	0	0	76	0.80
112917--112949	2	17.5	2	87	12	52	51	0	0	48	1.00
114113--114202	21	4.4	21	80	4	103	41	16	24	17	1.90
114127--114202	21	3.7	21	82	3	109	40	17	25	17	1.90
114113--114202	41	2.2	41	97	0	171	41	16	24	17	1.90
114129--114263	41	3.3	41	81	6	123	38	20	21	20	1.94
114191--114285	20	4.7	20	80	2	91	34	24	17	23	1.96
114645--114680	14	2.6	14	95	0	63	30	0	25	44	1.54
114787--114853	19	3.8	19	72	23	65	44	20	22	11	1.84
114858--115008	19	8.7	19	64	21	80	15	22	20	41	1.89
114862--114988	33	3.9	32	87	8	193	14	22	19	42	1.88
114855--114987	66	2.0	66	97	0	248	16	22	19	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117277--117301	12	2.1	12	100	0	50	0	28	0	72	0.86
117476--117529	24	2.2	24	90	0	81	38	20	16	24	1.92
118587--118664	20	3.9	20	98	0	147	37	24	23	15	1.93
118687--118760	19	4.5	16	83	16	66	13	20	18	47	1.82
118683--118750	19	3.8	19	87	12	101	13	22	17	47	1.82
120770--120825	20	2.9	19	86	5	85	35	23	25	16	1.94
120809--120899	32	2.8	33	88	3	139	49	20	16	13	1.79
120916--120973	14	3.9	14	79	16	71	8	17	25	48	1.75
120911--120989	32	2.4	33	95	2	142	10	18	24	46	1.80
120911--120989	14	4.8	17	71	22	62	10	18	24	46	1.80
120974--121028	20	2.8	19	83	8	65	16	23	23	36	1.94
121501--121545	18	2.5	18	88	0	72	13	15	44	26	1.83
122863--122900	20	1.9	20	88	0	58	50	21	15	13	1.78
123164--123206	21	2.0	21	95	0	77	18	16	44	20	1.87
123393--123486	20	4.7	20	80	2	89	23	18	24	34	1.96
123373--123487	20	5.7	20	78	5	88	23	17	23	35	1.95
123476--123568	20	4.5	21	78	4	100	17	24	18	39	1.91
123415--123549	41	3.3	41	82	4	139	19	21	20	38	1.94
123476--123568	41	2.3	41	100	0	186	17	24	18	39	1.91
127700--127764	25	2.6	26	83	9	73	30	1	3	64	1.18
127623--127757	70	1.9	69	82	7	166	34	2	2	61	1.20
127613--127765	16	9.7	15	68	18	71	34	1	1	61	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127676--127768	33	2.9	33	78	12	97	34	1	2	62	1.14
128224--128334	42	2.6	42	84	5	143	50	5	18	25	1.68
130117--130197	23	3.5	23	89	0	117	27	14	22	35	1.93
130179--130229	23	2.2	23	85	0	66	37	25	13	23	1.92
130331--130367	19	1.9	19	88	0	56	56	2	8	32	1.43
135979--136061	23	3.7	23	85	3	123	21	22	25	30	1.99
135979--136075	23	4.4	22	75	10	72	25	19	24	29	1.98
136172--136208	19	1.9	19	88	0	56	56	2	8	32	1.43
138109--138141	16	1.9	18	88	11	52	27	3	6	63	1.32
138612--138859	130	1.9	130	91	0	406	35	12	15	36	1.86
139158--139186	3	10.0	3	92	7	51	65	34	0	0	0.93
143839--143914	35	2.2	35	92	0	125	35	1	23	39	1.63
147566--147613	3	15.7	3	80	8	53	33	2	2	62	1.18
147564--147608	17	2.9	15	83	9	56	33	2	2	62	1.20
147563--147613	17	3.0	17	75	16	52	33	1	1	62	1.17
149586--149627	13	3.2	13	86	0	66	28	21	16	33	1.95
152864--152914	6	8.5	6	82	8	68	21	33	0	45	1.52
152877--152926	12	4.2	12	89	0	64	20	36	2	42	1.63
152862--152926	18	3.6	18	85	4	69	21	35	1	41	1.63
154443--154500	21	2.7	21	81	10	64	13	17	17	51	1.76
155404--155443	6	6.7	6	88	11	64	82	0	17	0	0.67
157655--157726	37	1.9	37	83	5	92	33	20	15	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
158631--158929	116	2.6	116	75	5	287	42	12	17	27	1.86
159278--159321	3	14.7	3	100	0	88	34	0	0	65	0.93
169215--169270	19	2.8	20	71	13	53	39	5	3	51	1.42
175281--175324	18	2.4	18	100	0	88	18	50	22	9	1.75
175334--175443	29	3.8	29	91	2	177	20	10	23	45	1.82
175334--175443	57	1.9	58	92	1	186	20	10	23	45	1.82
175421--175487	29	2.3	29	84	0	80	25	8	22	43	1.82
182707--182743	13	2.8	13	87	0	56	18	45	21	13	1.84
182754--182864	29	3.8	29	90	0	168	21	9	22	45	1.81
182754--182885	58	2.3	59	81	7	155	23	9	22	44	1.81

Tables:   1

The End!