genome.fa.s4264.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004264.1 Hibiscus syriacus cultivar Beakdansim tig00009342_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62404

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34--248	58	3.7	58	83	4	274	45	12	8	33	1.72
34--248	115	1.9	115	86	1	306	45	12	8	33	1.72
1178--1260	31	2.7	30	80	9	96	31	30	26	12	1.92
1400--1497	24	4.1	24	82	2	108	50	17	11	21	1.77
8376--8416	21	1.9	22	90	5	66	26	19	17	36	1.94
9426--9467	14	2.8	16	76	23	54	52	9	7	30	1.61
11248--11288	21	1.9	22	90	5	66	24	19	17	39	1.92
13094--13128	17	2.1	17	100	0	70	42	28	11	17	1.83
13625--13658	15	2.2	16	89	5	52	61	0	14	23	1.33
16703--16781	19	4.2	19	80	0	86	32	20	6	40	1.77
18563--18592	11	2.7	11	94	0	51	16	23	10	50	1.75
22007--22040	18	1.9	18	88	5	52	8	20	5	64	1.43
27533--27581	10	4.7	10	79	5	53	53	2	2	42	1.24
28114--28414	95	3.3	90	79	12	274	19	21	15	42	1.88
28191--28414	95	2.4	96	90	1	353	20	22	14	42	1.88
28682--28706	13	1.9	13	100	0	50	48	8	16	28	1.74
29042--29085	22	2.0	22	86	8	63	38	11	11	38	1.77
36069--36133	24	2.7	24	97	0	121	16	20	27	35	1.94
36170--36217	10	4.9	10	76	2	53	52	0	2	45	1.12
36603--36650	24	2.0	25	91	4	80	43	4	6	45	1.48
38110--38147	18	2.1	18	100	0	76	44	26	5	23	1.74
38496--38535	16	2.5	16	100	0	80	12	37	0	50	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38791--39148	82	4.4	82	81	6	354	30	16	18	34	1.94
38791--39148	163	2.2	163	81	3	418	30	16	18	34	1.94
42083--42230	42	3.5	42	78	5	133	33	18	15	33	1.92
42806--42850	15	3.0	15	100	0	90	33	6	0	60	1.23
48180--48241	14	4.6	14	76	15	67	40	0	1	58	1.08
48161--48265	40	2.8	39	87	9	141	41	0	1	56	1.10
48280--48323	15	2.7	15	80	19	52	43	2	0	54	1.12
48179--48328	61	2.5	61	77	14	152	42	0	1	56	1.13
49791--49828	16	2.4	16	87	12	53	52	0	0	47	1.00
51021--51050	14	2.1	15	93	6	53	40	6	0	53	1.27
51399--51425	3	9.0	3	100	0	54	66	0	33	0	0.92
52482--52531	24	2.1	24	81	7	57	52	10	4	34	1.54
53175--53224	22	2.3	22	96	0	91	18	30	10	42	1.82
53345--53377	15	2.3	15	90	10	52	72	3	3	21	1.11
53692--54027	127	2.8	117	88	9	530	30	8	7	53	1.58
53768--54065	127	2.3	126	94	2	533	32	8	6	53	1.56
53944--54148	111	1.8	111	94	0	365	35	9	3	51	1.52
53692--54148	243	1.9	241	86	3	634	32	8	5	52	1.56
54120--54158	10	3.9	10	82	0	51	41	12	0	46	1.42
54779--54820	22	2.0	21	85	4	57	23	4	7	64	1.38
55704--55745	21	2.0	21	86	9	59	61	0	0	38	0.96

Tables:   1

The End!