genome.fa.s4271.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004271.1 Hibiscus syriacus cultivar Beakdansim tig00009365_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86049

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1973--2002	13	2.2	14	94	5	53	40	0	0	60	0.97
8649--8721	24	3.2	22	83	11	85	60	0	1	38	1.06
8656--8721	23	2.8	24	90	9	100	60	0	0	39	0.97
8701--8773	23	2.9	26	75	21	82	54	0	5	39	1.23
8721--8785	23	2.9	23	75	22	66	52	0	6	41	1.26
9875--9899	2	12.5	2	100	0	50	52	0	0	48	1.00
11614--11867	84	3.0	84	79	4	267	24	18	22	34	1.96
11865--11984	33	3.6	33	86	8	163	30	8	19	41	1.81
11859--11984	68	1.9	66	86	6	182	30	8	19	40	1.82
11939--12088	67	2.2	68	83	8	180	34	12	22	30	1.91
12037--12289	36	7.1	37	75	12	253	41	13	18	26	1.87
11967--12169	73	2.9	68	79	11	182	38	13	20	27	1.90
12037--12289	73	3.6	73	74	11	265	41	13	18	26	1.87
13995--14044	11	4.9	10	75	20	50	10	10	0	80	0.92
13989--14071	6	13.7	6	72	15	55	6	12	1	80	0.94
14012--14072	19	3.1	19	86	11	70	4	11	1	81	0.90
13989--14078	18	5.1	17	77	7	81	5	12	2	80	0.98
17223--17318	8	11.5	8	74	14	61	66	0	17	15	1.25
17231--17310	8	9.6	8	74	17	65	63	0	18	17	1.31
17223--17318	17	5.7	17	77	12	83	66	0	17	15	1.25
25828--25861	17	1.9	17	88	5	50	55	5	2	35	1.39
25748--26062	136	2.3	136	98	0	603	42	6	2	48	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25964--25997	17	1.9	17	88	5	50	55	5	2	35	1.39
30534--30574	15	2.7	15	96	3	73	14	29	29	26	1.95
30627--30680	15	3.5	15	76	18	65	16	27	31	24	1.96
30612--30680	32	2.2	32	89	0	102	18	27	30	23	1.98
34565--34593	2	14.5	2	100	0	58	48	0	0	51	1.00
37270--37340	35	2.0	36	91	8	119	22	29	29	18	1.97
39781--39821	21	2.0	21	95	0	73	34	29	19	17	1.94
40469--40543	21	3.5	22	67	15	59	28	26	8	37	1.84
40458--40544	42	2.1	42	95	0	156	29	25	8	36	1.85
40806--40854	20	2.5	20	96	0	89	28	28	12	30	1.93
46282--46337	16	3.0	20	73	24	59	48	0	1	50	1.11
46975--47017	20	2.3	19	84	8	52	46	9	20	23	1.79
47168--47240	36	2.0	36	84	10	96	49	4	1	45	1.29
49557--49608	14	3.7	14	90	7	79	21	9	28	40	1.84
53094--53136	21	2.0	22	81	4	52	37	0	2	60	1.10
53680--53808	60	2.2	60	82	2	152	34	22	3	38	1.73
56658--56724	24	2.8	24	82	6	75	25	23	17	32	1.97
56671--56724	24	2.2	24	90	0	81	25	25	16	31	1.97
62694--62767	36	2.1	36	97	0	139	37	9	2	50	1.49
64686--64757	30	2.4	30	86	2	92	31	29	20	18	1.96
65758--65815	20	2.6	22	86	10	75	25	22	22	29	1.99
68052--68081	2	15.5	2	93	6	53	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71206--71277	31	2.3	31	83	4	92	51	9	12	26	1.70
71934--72274	51	6.7	51	81	4	391	45	16	14	24	1.84
71948--72273	103	3.2	102	84	2	404	44	16	13	24	1.84
71934--72274	154	2.2	153	82	5	402	45	16	14	24	1.84
72468--72495	12	2.3	12	100	0	56	50	0	0	50	1.00
72727--72770	19	2.3	19	84	0	52	34	34	11	20	1.88
72867--72939	20	3.7	20	81	3	85	36	24	10	27	1.89
75494--75534	12	3.4	12	86	0	55	56	24	2	17	1.53
75493--75527	6	5.8	6	86	0	52	60	20	2	17	1.49
75941--76007	20	3.3	20	85	0	98	22	14	20	41	1.89
76111--76268	64	2.5	64	96	1	289	50	17	1	29	1.57
77630--77744	21	5.5	21	76	4	97	22	18	37	21	1.94
77630--77765	42	3.2	42	82	2	148	23	19	36	21	1.95
77652--77769	21	5.6	21	81	7	123	23	18	35	22	1.96
77630--77765	63	2.2	63	85	2	175	23	19	36	21	1.95
77913--77962	4	12.5	4	78	0	55	68	4	4	24	1.24
79880--79925	20	2.3	21	85	11	69	43	21	19	15	1.87
79938--79980	20	2.2	20	82	0	50	13	11	20	53	1.71
80305--80348	22	2.0	22	95	0	79	29	13	34	22	1.93
80479--80577	20	4.9	20	84	0	135	20	11	23	45	1.82
80566--80617	20	2.6	20	90	0	77	19	15	23	42	1.89
80614--80659	21	2.2	21	88	7	67	41	17	21	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80857--80910	16	3.5	15	80	12	56	59	0	1	38	1.08
82126--82238	60	1.9	60	81	0	136	33	15	12	38	1.84

Tables:   1

The End!