genome.fa.s4294.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004294.1 Hibiscus syriacus cultivar Beakdansim tig00009425_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99282

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
457--521	25	2.6	25	80	0	85	35	9	13	41	1.77
1338--1374	18	2.1	18	89	0	56	32	5	10	51	1.60
1629--1712	36	2.2	38	87	6	127	50	17	14	17	1.79
2127--2199	23	3.2	23	86	0	92	34	4	20	41	1.72
2552--2622	23	3.2	23	82	8	83	33	4	21	40	1.72
2576--2627	21	2.5	21	87	6	70	34	1	21	42	1.64
2980--3050	21	3.3	21	78	7	70	33	4	21	40	1.72
2997--3045	23	2.1	23	88	7	73	34	2	20	42	1.64
1924--3388	423	3.5	430	96	3	2747	41	7	12	38	1.72
19455--19511	28	2.0	28	80	12	64	40	3	3	52	1.35
20413--20453	16	2.5	17	76	19	50	36	2	31	29	1.71
20587--20659	35	2.1	36	84	7	96	47	4	1	46	1.30
25772--25916	38	3.8	38	88	1	211	46	9	1	42	1.45
25775--25916	75	1.9	76	89	1	223	47	9	1	41	1.45
26914--26959	23	2.0	23	86	0	65	41	8	17	32	1.80
29923--31600	200	8.5	200	89	3	2479	28	13	15	42	1.85
29923--31600	401	4.2	400	89	4	2515	28	13	15	42	1.85
30715--31083	180	2.0	180	92	1	614	27	13	16	42	1.86
29923--31484	581	2.7	580	91	2	2453	28	13	15	42	1.85
31769--31825	6	9.5	6	82	0	60	56	8	1	33	1.41
31757--31839	24	3.4	24	89	1	121	51	9	1	37	1.42
31757--31821	30	2.2	30	85	0	85	52	7	1	38	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31765--31801	18	2.1	18	89	0	56	54	8	0	37	1.30
33022--33062	3	13.7	3	89	0	64	29	31	0	39	1.57
34223--34266	15	2.9	15	82	0	61	27	4	47	20	1.69
34621--35892	199	6.5	198	88	3	1793	27	13	15	42	1.86
35520--35889	184	2.0	185	89	1	564	27	14	15	42	1.86
36226--36275	19	2.6	19	93	0	82	58	10	2	30	1.42
37740--37778	18	2.2	18	95	0	69	5	41	0	53	1.23
38445--38501	24	2.5	21	76	17	60	49	8	1	40	1.44
39790--39975	31	6.2	31	93	6	319	34	15	11	38	1.83
39856--39940	16	5.4	16	64	25	56	31	16	12	38	1.87
39872--39955	15	5.5	15	64	25	50	32	15	13	39	1.86
40114--40149	12	3.0	12	91	0	63	36	25	5	33	1.79
40540--40643	45	2.3	44	83	9	122	27	18	21	32	1.96
42062--42126	19	3.4	19	86	0	94	33	16	0	49	1.47
42517--43357	182	4.6	181	83	4	973	28	14	12	44	1.81
51991--52117	60	2.1	61	83	4	159	40	3	23	33	1.71
59491--59532	2	21.5	2	95	4	77	50	0	0	50	1.00
63643--63701	31	1.9	30	83	10	75	15	11	1	71	1.23
65488--65533	22	2.1	21	84	4	56	26	19	4	50	1.66
66658--66726	20	3.2	20	82	10	66	79	5	11	2	1.01
68227--68331	36	2.9	36	91	2	165	24	23	13	38	1.91
68227--68336	37	3.0	37	90	2	168	26	23	12	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68447--68534	37	2.4	37	83	5	108	27	21	12	38	1.89
68245--68702	102	4.5	102	88	3	627	30	21	12	36	1.90
68245--68702	203	2.2	205	87	2	663	30	21	12	36	1.90
68549--68618	36	1.9	36	85	0	95	27	21	12	38	1.90
68564--68635	36	2.0	36	83	0	90	26	23	12	37	1.90
68577--68714	67	2.1	67	88	2	206	31	21	13	34	1.91
69600--70640	105	10.0	104	90	4	1532	33	26	18	22	1.96
69600--70640	205	5.0	205	93	2	1602	33	26	18	22	1.96
69600--70640	310	3.3	311	90	4	1559	33	26	18	22	1.96
71638--71675	15	2.7	14	88	8	51	26	2	2	68	1.16
72148--72206	31	1.9	30	83	10	75	15	11	1	71	1.23
77927--78278	175	2.0	175	100	0	704	25	23	20	30	1.99
80644--80677	6	5.8	6	93	6	61	14	0	0	85	0.60
82411--82493	20	4.1	20	81	3	112	42	18	24	15	1.89
82413--82492	41	2.0	40	87	2	115	41	18	23	16	1.90
82482--82575	20	4.7	20	78	2	89	31	27	18	22	1.97
82439--82554	41	2.8	42	79	7	114	39	23	18	18	1.92
83093--83159	19	3.5	19	85	2	89	47	25	16	10	1.78
83155--83300	19	8.1	19	72	17	105	12	22	21	43	1.86
83188--83275	33	2.6	33	92	1	140	11	25	25	38	1.89
83243--83292	20	2.5	20	83	6	57	14	24	22	40	1.90
85300--85422	42	2.9	42	80	2	122	22	36	17	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85356--85422	21	3.2	21	66	6	55	23	35	20	19	1.95
86768--86817	14	3.7	14	81	5	59	26	0	22	52	1.48
86943--87001	19	3.4	19	73	22	74	13	22	18	45	1.84
86924--87000	33	2.3	34	84	6	104	18	22	20	38	1.93
89293--89317	12	2.1	12	100	0	50	0	28	0	72	0.86
89492--89545	24	2.2	24	90	0	81	38	20	16	24	1.92
90602--90642	20	2.0	20	90	0	64	36	24	21	17	1.94
92668--92734	19	3.5	19	83	4	89	37	23	23	14	1.93
92723--92780	14	3.9	14	77	16	62	48	24	17	10	1.78
92707--92785	32	2.4	33	91	2	124	46	21	18	12	1.82
92792--92912	19	6.6	19	78	12	101	13	21	23	42	1.88
92828--92912	20	4.4	19	83	5	91	14	22	23	40	1.90
93388--93432	18	2.5	18	88	0	72	13	15	44	26	1.83
94455--94506	20	2.6	20	93	0	86	25	21	28	25	1.99
94434--94548	20	5.7	19	77	9	77	24	17	24	33	1.96
94537--94629	20	4.5	21	78	4	100	17	24	18	39	1.91
94476--94610	41	3.3	41	83	4	139	19	21	21	37	1.94
94537--94629	41	2.3	41	100	0	186	17	24	18	39	1.91
99213--99237	6	4.2	6	100	0	50	32	52	0	16	1.44

Tables:   1

The End!