genome.fa.s430.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000430.1 Hibiscus syriacus cultivar Beakdansim tig00000789_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57434

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9715--9802	3	29.7	3	76	15	76	56	0	2	40	1.11
9717--9802	26	3.2	26	78	15	88	56	0	2	40	1.12
9715--9802	29	2.9	30	76	20	94	56	0	2	40	1.11
10057--10110	20	2.7	20	82	0	63	29	22	22	25	1.99
9932--10216	120	2.4	119	90	3	434	34	20	15	30	1.93
18822--18912	3	31.0	3	73	16	66	59	1	2	37	1.17
18824--18900	34	2.4	31	82	6	91	57	1	2	38	1.21
18812--18906	21	4.8	20	71	23	76	55	1	2	41	1.18
19038--19310	119	2.3	119	94	0	483	36	18	12	32	1.88
19196--19419	99	2.3	99	88	0	322	34	16	13	34	1.89
28051--28122	3	24.0	3	73	16	51	55	0	2	41	1.14
28041--28121	10	7.8	10	76	17	76	53	0	2	44	1.14
28051--28122	23	3.3	23	72	21	64	55	0	2	41	1.14
30546--30597	21	2.4	22	87	9	72	26	23	17	32	1.96
31981--32423	222	2.0	218	80	6	502	37	14	16	31	1.89
34721--34766	21	2.0	22	84	12	58	43	23	10	21	1.84
36920--36958	18	2.2	18	90	0	60	53	7	7	30	1.57
36914--36977	24	2.7	24	82	0	74	53	9	6	31	1.58
39862--39903	22	2.0	22	90	4	68	47	7	9	35	1.64
39986--40029	21	2.1	21	91	0	70	27	4	20	47	1.69
40012--40525	200	2.6	200	90	1	816	31	15	14	38	1.87
40490--40546	20	2.7	21	89	8	89	59	8	8	22	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40296--40945	199	3.0	218	85	8	856	32	15	13	38	1.86
40510--41052	199	2.7	200	90	2	840	32	15	13	39	1.86
40089--40945	421	2.0	421	91	1	1405	32	15	13	38	1.87
40918--41186	128	2.1	127	80	4	283	33	15	11	39	1.83
47979--48620	183	3.5	183	88	3	942	27	14	13	43	1.84
49059--49120	26	2.4	27	83	5	74	43	1	0	54	1.09
56153--56278	65	2.0	61	83	10	155	26	23	19	30	1.98
56173--56297	65	1.9	64	82	9	155	28	21	19	30	1.97

Tables:   1

The End!