genome.fa.s4309.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004309.1 Hibiscus syriacus cultivar Beakdansim tig00009447_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  426183

Tables:   1   2   3   

This is table  3  of  3  ( 267 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
394053--394162	36	3.1	36	78	5	134	40	15	20	23	1.90
394062--394153	34	2.6	35	84	3	114	45	17	18	18	1.86
394176--394232	30	1.9	30	82	13	73	35	12	15	36	1.85
394220--394302	36	2.3	36	87	0	112	40	14	19	25	1.89
394189--394571	102	3.8	102	82	2	414	38	13	18	29	1.89
394347--394871	167	3.1	167	91	0	818	41	12	17	28	1.86
394191--394570	204	1.9	203	81	3	460	38	13	18	28	1.89
394477--394620	65	2.2	65	82	2	173	40	13	18	27	1.88
395020--395341	106	3.0	106	88	0	439	23	20	21	34	1.97
395937--396006	32	2.2	32	89	0	104	32	22	14	30	1.94
396918--397055	69	2.0	69	94	0	240	25	13	23	37	1.92
397116--397172	24	2.4	24	77	16	64	5	15	3	75	1.12
397128--397178	12	4.2	12	80	14	61	1	13	3	80	0.94
397127--397178	24	2.2	23	90	10	79	3	13	3	78	1.02
400553--400601	25	2.0	25	87	0	71	63	2	6	28	1.30
400557--400626	28	2.6	27	80	8	70	68	2	5	22	1.24
400658--400714	2	28.5	2	100	0	114	50	0	0	49	1.00
400707--400748	22	1.9	22	85	0	57	71	0	4	23	1.05
406327--406452	65	2.0	64	82	4	155	30	17	22	29	1.96
406832--406888	24	2.5	23	81	13	66	24	35	0	40	1.56
409139--409214	23	3.4	23	70	14	77	26	25	25	23	2.00
413045--413087	21	2.0	21	82	13	52	34	6	2	55	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
414964--415120	65	2.4	64	83	7	176	27	18	24	29	1.98
417151--417449	72	4.2	72	82	3	345	37	12	21	28	1.90
417151--417428	143	1.9	143	86	2	389	36	12	21	28	1.91
420636--420674	21	1.9	20	89	5	60	35	12	17	33	1.88
425141--425170	14	2.1	14	100	0	60	40	16	13	30	1.87

Tables:   1   2   3

The End!