genome.fa.s434.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000434.1 Hibiscus syriacus cultivar Beakdansim tig00000796_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65162

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
737--777	18	2.2	19	95	4	75	24	4	24	46	1.72
2269--2949	200	3.4	200	86	2	895	32	15	14	37	1.88
5417--5464	19	2.5	19	93	0	78	52	8	6	33	1.57
6757--8143	199	7.0	199	87	3	1800	31	16	14	38	1.88
6757--8143	400	3.5	397	87	3	1863	31	16	14	38	1.88
12335--13310	201	4.9	200	90	1	1386	32	16	14	37	1.89
13734--13782	19	2.6	19	96	0	89	55	10	2	32	1.45
13824--13867	19	2.3	19	92	0	70	54	13	2	29	1.51
13832--13872	19	2.2	19	95	0	73	53	9	2	34	1.47
15073--15997	182	5.1	182	90	1	1410	27	16	14	41	1.87
15073--15997	362	2.5	362	90	1	1424	27	16	14	41	1.87
18193--18225	12	2.7	13	86	13	52	33	45	12	9	1.73
18402--18523	32	3.8	31	89	1	100	10	45	13	30	1.78
18441--18523	32	2.6	32	98	0	157	12	43	14	30	1.82
20075--20132	29	2.0	29	96	0	107	17	5	15	62	1.50
25750--25775	3	8.7	3	100	0	52	30	0	0	69	0.89
32186--32222	17	2.2	17	100	0	74	32	24	0	43	1.55
33131--33159	15	1.9	15	100	0	58	31	13	13	41	1.84
36280--36313	2	17.0	2	100	0	68	50	0	0	50	1.00
37382--37454	29	2.3	31	75	15	78	23	2	13	60	1.46
37395--37452	29	2.0	29	93	0	98	20	1	15	62	1.42
40430--40499	32	2.3	31	80	7	81	48	11	17	22	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50090--50150	30	2.0	30	90	0	95	39	21	13	26	1.90
57203--57459	132	1.9	132	97	0	487	28	22	22	25	1.99
58193--58262	31	2.3	31	94	0	131	42	24	12	20	1.86

Tables:   1

The End!