genome.fa.s4393.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004393.1 Hibiscus syriacus cultivar Beakdansim tig00009637_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  153965

Tables:   1   

This is table  1  of  1  ( 98 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6131--6167	2	19.0	2	94	5	67	0	51	0	48	1.00
6133--6166	17	2.0	17	100	0	68	0	52	0	47	1.00
12015--12067	3	18.0	3	90	3	72	60	0	0	39	0.97
12412--13087	113	6.0	114	89	2	943	28	18	14	38	1.90
12996--13040	23	1.9	23	82	13	56	15	26	6	51	1.68
13775--14089	115	2.7	114	95	2	560	32	22	13	32	1.92
15243--15306	8	8.2	8	81	13	64	0	18	0	81	0.70
15244--15306	23	2.7	23	90	9	94	0	19	0	80	0.70
15243--15306	21	3.1	21	86	6	78	0	18	0	81	0.70
22633--22664	15	2.1	15	94	0	55	46	9	18	25	1.79
28043--28117	3	25.0	3	91	0	123	62	0	0	37	0.95
29385--29480	6	16.2	6	81	5	88	70	0	1	28	0.94
29385--29483	12	8.1	12	78	7	101	71	0	1	27	0.92
29387--29483	18	5.2	18	79	3	104	72	0	1	26	0.92
29389--29483	21	4.5	21	81	5	111	71	0	1	27	0.93
29436--29503	21	3.5	20	83	15	65	76	2	0	20	0.92
31111--31246	72	1.9	72	93	0	236	30	20	14	34	1.93
34528--34606	22	3.6	22	87	0	122	31	15	13	39	1.86
35276--36048	47	16.8	45	91	2	992	25	22	19	32	1.97
36765--36795	11	2.9	11	95	4	55	74	0	0	25	0.82
37029--37090	3	21.7	3	83	9	85	32	0	1	66	1.02
37029--37092	17	3.6	18	78	14	78	31	0	1	67	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38485--38572	46	1.9	46	95	4	160	38	12	19	29	1.88
40328--40372	21	2.2	20	88	4	63	17	15	6	60	1.56
42465--42600	72	1.9	72	98	0	263	26	21	18	33	1.96
44285--44325	20	2.0	20	95	0	73	39	24	14	21	1.91
45924--46002	22	3.6	22	84	0	104	32	15	12	39	1.85
46192--46865	45	14.8	45	91	2	990	24	22	19	33	1.97
46831--47192	132	2.8	132	89	2	559	31	18	15	35	1.92
47389--47447	3	19.3	3	85	3	82	40	0	0	59	0.97
47666--47726	23	2.7	23	86	0	86	19	47	13	19	1.82
48801--48834	17	2.0	17	88	0	50	67	5	2	23	1.26
49063--49119	3	20.0	3	82	10	75	33	0	1	64	1.04
49059--49119	14	4.4	14	89	6	81	32	0	1	65	1.02
49059--49118	17	3.8	16	82	14	72	31	0	1	66	1.01
49078--49119	17	2.5	17	96	0	75	35	0	2	61	1.09
49326--49354	2	14.5	2	100	0	58	51	0	0	48	1.00
57871--57917	25	1.9	24	82	4	58	34	8	6	51	1.58
58182--58229	17	2.8	17	96	0	87	33	8	41	16	1.78
58796--58829	13	2.5	14	90	4	52	38	0	0	61	0.96
64846--65027	66	2.7	67	81	10	201	42	8	5	43	1.57
69236--69478	64	3.8	63	75	13	205	41	6	7	44	1.58
70978--71039	31	2.0	31	93	0	106	22	12	38	25	1.90
71044--71094	22	2.4	22	90	9	79	25	29	31	13	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71140--71227	29	3.0	29	83	3	115	20	32	31	14	1.93
79069--79103	2	17.5	2	100	0	70	51	0	0	48	1.00
79416--79451	17	2.1	17	100	0	72	38	25	5	30	1.78
83165--83208	2	22.0	2	90	9	72	47	0	2	50	1.13
85379--85405	7	3.9	7	100	0	54	44	0	11	44	1.39
85407--85431	2	12.5	2	100	0	50	0	0	48	52	1.00
88381--88553	34	4.9	34	78	15	176	43	5	6	43	1.55
88422--88446	12	2.1	12	100	0	50	44	8	8	40	1.63
88459--88483	11	2.3	11	100	0	50	40	8	8	44	1.63
88357--88551	108	1.8	104	84	6	266	45	5	6	42	1.54
88381--88570	71	2.7	74	84	9	231	42	5	7	44	1.56
88381--88600	71	3.1	70	79	12	175	44	5	7	43	1.55
88583--88632	25	1.9	27	88	8	77	38	0	8	54	1.30
88617--88670	3	17.3	3	85	14	74	33	0	1	64	1.04
89855--89914	21	2.9	20	75	24	54	13	5	3	78	1.04
89872--89913	19	2.2	20	83	12	52	14	4	2	78	1.01
95018--95661	164	3.9	164	90	1	941	30	24	21	24	1.99
94977--95595	81	7.6	81	77	6	611	29	24	21	23	1.99
94977--95665	81	8.4	79	76	6	523	29	24	21	24	1.99
96352--96524	34	4.9	34	78	15	176	43	5	6	43	1.55
96393--96417	12	2.1	12	100	0	50	44	8	8	40	1.63
96430--96454	11	2.3	11	100	0	50	40	8	8	44	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96321--96591	108	2.5	109	79	12	308	44	4	7	43	1.52
96352--96541	71	2.7	74	84	9	231	42	5	7	44	1.56
96400--96569	71	2.3	70	81	7	187	44	6	8	41	1.60
96603--96649	3	15.3	3	95	4	85	31	0	0	68	0.90
96587--96649	21	2.8	22	90	9	92	33	0	1	65	1.03
97854--97896	20	2.2	20	84	16	54	13	4	2	79	1.00
97854--97895	19	2.2	20	83	12	52	14	4	2	78	1.01
101658--101708	22	2.3	22	86	0	66	37	17	17	27	1.93
101658--101762	22	4.8	21	72	15	61	36	20	18	25	1.95
102045--102091	20	2.5	19	86	6	60	25	19	21	34	1.96
102145--102190	20	2.4	20	82	17	62	26	28	19	26	1.99
105191--105225	18	1.9	18	94	0	61	28	22	20	28	1.98
106019--106080	22	2.7	22	77	5	61	38	24	8	29	1.84
107862--107901	11	3.7	10	84	15	53	17	27	35	20	1.95
107862--107901	5	7.4	5	84	15	53	17	27	35	20	1.95
107862--107902	17	2.5	17	96	4	75	17	29	34	19	1.94
109144--109176	16	2.1	16	88	11	50	48	0	0	51	1.00
121223--121529	153	2.0	153	99	0	605	38	16	15	28	1.90
123331--124126	404	2.0	405	92	1	1335	36	14	22	27	1.92
130548--130623	39	1.9	39	84	5	100	44	1	18	35	1.58
130560--130655	39	2.5	39	75	1	95	45	4	19	30	1.69
130626--130675	24	2.1	24	82	17	61	52	4	20	24	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134490--134514	12	2.1	12	100	0	50	36	32	0	32	1.58
134589--134618	15	2.0	15	100	0	60	13	6	13	66	1.43
134902--134940	2	19.5	2	100	0	78	48	0	0	51	1.00
144547--144968	84	5.0	84	90	0	664	31	27	18	23	1.98
144547--145066	169	3.1	167	89	5	727	31	26	19	23	1.98
145497--145572	33	2.3	33	90	2	116	38	15	14	31	1.88
146353--146435	2	41.5	2	74	17	57	46	6	4	42	1.49
148773--148813	3	13.7	3	90	10	66	70	0	0	29	0.87
149244--149286	21	2.0	22	81	4	52	30	25	16	27	1.97
150444--150477	17	2.0	17	88	0	50	32	5	0	61	1.20

Tables:   1

The End!