genome.fa.s4404.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004404.1 Hibiscus syriacus cultivar Beakdansim tig00009652_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64064

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14299--14337	19	2.1	19	90	0	60	33	25	15	25	1.95
14420--14469	20	2.5	20	93	0	82	22	32	24	22	1.98
17596--17630	18	1.9	18	94	0	61	54	25	2	17	1.57
17688--17970	140	2.0	140	97	0	530	28	12	14	44	1.82
17941--18037	20	4.8	20	90	0	149	31	20	19	27	1.97
18080--18133	20	2.7	20	88	5	74	12	18	25	42	1.86
18207--18274	13	5.1	13	78	7	82	54	17	0	27	1.43
18185--18274	27	3.2	27	93	6	144	51	18	0	30	1.47
19664--19750	21	4.1	21	76	5	86	26	18	35	19	1.95
19665--19746	42	1.9	42	87	2	119	25	18	35	20	1.95
20225--20268	20	2.2	20	95	0	79	50	22	13	13	1.77
20255--20326	20	3.6	20	86	0	99	34	23	22	19	1.96
20322--20367	20	2.3	20	96	0	83	15	21	26	36	1.93
22366--22439	20	3.7	20	81	0	76	43	21	17	17	1.88
22826--22876	22	2.3	22	89	0	75	21	13	43	21	1.87
23043--23087	20	2.2	20	84	0	54	35	24	20	20	1.96
23058--23099	20	2.1	20	86	0	57	35	21	19	23	1.96
23173--23211	19	2.1	19	95	0	69	23	15	28	33	1.95
24142--24255	60	1.9	60	81	3	140	34	14	14	36	1.87
26070--26264	84	2.3	84	98	0	372	40	14	18	27	1.89
31605--31697	21	4.5	21	78	4	100	39	18	24	17	1.91
31605--31697	41	2.3	41	100	0	186	39	18	24	17	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31624--31758	41	3.3	41	84	4	148	38	20	20	20	1.94
31686--31779	20	4.7	20	80	2	89	34	24	17	24	1.96
31967--32010	22	2.0	22	95	0	79	20	45	15	18	1.85
32274--32311	20	1.9	20	88	0	58	13	15	21	50	1.78
33630--33674	18	2.5	18	88	0	72	26	44	15	13	1.83
34146--34200	20	2.8	19	83	5	74	36	23	23	16	1.94
34200--34257	14	3.9	14	77	16	62	50	25	15	8	1.73
34184--34274	32	2.8	33	93	3	157	48	23	17	10	1.79
34146--34279	19	7.6	19	70	18	83	43	23	20	12	1.86
34286--34408	20	6.7	19	78	10	105	13	20	24	42	1.87
34275--34408	39	3.6	37	71	18	111	12	19	25	42	1.86
36407--36474	19	3.8	19	85	14	101	47	17	22	13	1.82
36493--36550	20	2.9	20	94	0	98	17	22	22	37	1.93
37608--37661	24	2.2	24	86	0	72	24	16	18	40	1.90
37836--37860	12	2.1	12	100	0	50	72	0	28	0	0.86
40885--40972	33	2.6	33	92	1	140	38	25	25	11	1.89
40860--41044	19	10.1	19	75	14	165	43	21	22	12	1.86
40955--41044	39	2.3	38	92	1	144	46	21	20	12	1.82
41040--41084	19	2.4	19	92	0	72	8	15	26	48	1.74
41653--41714	20	3.0	21	71	4	63	22	14	19	43	1.87
41700--41792	20	4.5	21	78	4	100	17	24	18	39	1.91
41639--41773	41	3.3	41	84	4	148	20	20	20	38	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41700--41792	41	2.3	41	100	0	186	17	24	18	39	1.91
42951--42995	22	2.0	22	82	0	54	57	4	20	17	1.56
51852--51896	18	2.6	17	85	3	63	35	6	28	28	1.83
53264--53296	17	2.0	17	94	5	59	48	27	0	24	1.51
54506--54568	32	2.0	32	87	3	92	38	9	11	41	1.73
56133--56167	17	2.1	17	100	0	70	37	28	0	34	1.58

Tables:   1

The End!