genome.fa.s4409.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004409.1 Hibiscus syriacus cultivar Beakdansim tig00009664_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77885

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
575--627	9	6.0	9	80	10	56	81	3	15	0	0.83
577--618	20	2.1	20	91	8	68	85	2	11	0	0.68
575--611	18	2.1	18	94	0	65	83	2	13	0	0.74
1636--1669	17	2.0	17	94	0	59	17	8	35	38	1.81
2395--2466	37	1.9	37	83	5	92	27	19	11	41	1.85
3070--3495	106	4.0	106	92	0	708	35	24	18	21	1.95
6568--6621	27	2.0	28	85	10	76	40	7	0	51	1.30
10391--10460	32	2.2	32	92	0	113	34	17	20	28	1.95
10401--10482	32	2.5	32	78	2	92	41	17	14	26	1.88
11209--11276	30	2.3	29	80	7	75	39	26	7	26	1.82
11685--11720	17	2.1	17	89	0	54	52	8	2	36	1.46
11883--12224	140	2.4	141	85	0	479	35	11	11	41	1.78
12035--12099	29	2.2	29	88	0	94	35	12	9	43	1.74
12064--12365	112	2.7	112	90	0	469	32	11	13	43	1.79
14163--14226	27	2.4	27	94	0	110	25	28	23	23	2.00
14327--14435	11	9.5	11	74	16	78	25	22	20	31	1.98
14358--14428	12	6.0	13	75	20	66	25	19	16	38	1.93
14351--14435	23	3.7	23	92	4	136	25	22	17	34	1.96
16821--16881	7	8.9	7	72	3	52	19	1	31	47	1.59
16991--17053	11	5.9	11	73	14	51	38	1	1	58	1.17
18664--18732	23	3.0	23	93	0	120	34	26	24	14	1.94
19451--19479	2	14.5	2	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19912--19960	23	2.1	23	84	0	62	34	14	6	44	1.70
23003--23044	19	2.2	19	86	0	57	19	30	0	50	1.48
25710--25758	23	2.1	23	84	0	62	34	14	6	44	1.70
31609--31707	23	4.4	23	83	2	112	19	20	21	39	1.93
31918--31963	18	2.6	18	82	0	56	58	2	10	28	1.43
32334--32367	16	2.1	17	88	5	52	38	2	17	41	1.65
33416--34277	6	145.7	6	96	3	1597	33	0	16	50	1.46
35959--35990	15	2.0	17	88	11	50	31	15	6	46	1.71
36079--36130	11	4.3	13	79	15	51	78	5	9	5	1.07
36085--36159	11	6.5	11	74	19	55	77	9	4	9	1.11
36355--36385	2	15.5	2	100	0	62	51	0	0	48	1.00
42628--42663	2	17.5	2	88	5	54	52	2	0	44	1.15
43020--43083	23	2.8	23	80	0	83	32	26	26	14	1.94
49511--49627	62	1.9	62	92	0	198	15	36	17	29	1.91
50112--50152	21	2.0	21	90	0	64	29	0	17	53	1.44
50580--50606	14	1.9	14	100	0	54	7	3	14	74	1.18
50628--50786	82	1.9	83	92	1	266	37	3	8	50	1.52
50753--50813	17	3.4	17	74	24	61	42	0	9	47	1.36
50764--50806	23	1.9	23	86	13	63	39	0	9	51	1.34
50774--50817	23	2.0	23	81	4	54	43	0	6	50	1.29
53885--54049	49	3.3	49	93	0	285	41	0	12	45	1.42
54035--54116	18	4.5	19	75	20	68	41	0	8	50	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53964--54097	18	8.1	16	66	20	62	41	0	8	49	1.34
54105--54397	26	11.7	26	82	10	335	45	3	7	43	1.47
54070--54377	98	3.1	98	88	5	451	44	2	8	44	1.47
56694--56754	11	5.5	11	77	14	63	36	13	1	49	1.52
56687--56757	22	3.2	22	97	0	133	36	14	1	47	1.52
56730--56778	15	3.2	16	71	11	57	42	12	0	44	1.41
56731--56796	30	2.2	30	89	8	98	45	12	1	40	1.51
56978--57017	21	1.9	21	100	0	80	57	15	0	27	1.38
57045--57099	18	3.4	18	65	31	52	52	9	0	38	1.33
56734--57407	363	1.8	362	85	8	932	46	12	1	39	1.50
57341--57391	21	2.3	23	90	9	81	52	15	0	31	1.43
57368--57451	39	2.2	39	93	2	143	40	17	1	40	1.58
57368--57469	39	2.7	37	85	8	98	44	18	0	36	1.57
57468--57505	9	4.2	9	90	10	60	68	0	0	31	0.90
57687--57765	11	6.8	12	68	7	56	44	13	17	24	1.85
57689--57769	23	3.5	23	98	0	153	44	13	17	24	1.85
57854--57937	29	2.9	29	90	0	132	16	29	29	23	1.96
57988--58049	30	2.1	30	90	0	97	30	32	24	12	1.93
58642--58755	30	3.8	29	80	12	124	49	0	11	38	1.45
60422--60448	2	13.5	2	100	0	54	48	0	0	51	1.00
60565--60619	28	2.0	28	85	7	76	36	18	10	34	1.86
64180--64241	23	2.8	22	87	4	88	17	25	32	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71868--71893	12	2.2	12	100	0	52	50	26	7	15	1.71

Tables:   1

The End!