genome.fa.s4426.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004426.1 Hibiscus syriacus cultivar Beakdansim tig00009705_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  282303

Tables:   1   2   

This is table  2  of  2  ( 182 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
206353--206377	13	1.9	13	100	0	50	60	0	0	40	0.97
207224--207267	16	2.8	16	82	3	63	0	4	11	84	0.77
210604--211492	34	24.9	35	75	12	673	35	22	20	21	1.96
210604--211492	139	6.2	138	80	11	822	35	22	20	21	1.96
210607--211162	244	2.3	244	88	5	845	36	21	20	21	1.95
211270--211324	28	2.0	26	89	6	83	29	32	18	20	1.96
211024--211476	178	2.5	178	85	6	572	35	23	19	22	1.96
211387--211690	37	8.1	37	72	8	202	35	23	19	21	1.96
211296--211701	79	5.3	74	69	12	225	34	23	20	21	1.96
211296--211663	152	2.4	152	89	2	551	35	23	19	21	1.96
211898--212176	81	3.5	81	96	0	506	30	16	20	32	1.95
214240--214351	43	2.7	41	87	8	131	27	1	10	59	1.41
214264--214365	43	2.3	43	89	1	159	27	0	13	57	1.43
220926--220975	21	2.5	19	81	15	57	78	0	10	12	0.98
221295--222293	34	27.9	34	76	11	780	35	21	20	22	1.96
221295--222464	139	8.1	140	78	10	972	35	22	20	22	1.96
222262--222617	79	4.7	77	72	13	270	33	23	19	22	1.97
222341--222644	37	8.1	37	74	11	228	35	23	19	21	1.96
222224--222617	152	2.6	152	92	2	621	34	24	19	21	1.97
222810--222893	42	2.0	42	88	0	123	23	15	21	39	1.92
222852--223130	81	3.5	81	96	0	506	30	15	21	32	1.94
224206--224307	43	2.3	43	93	1	168	26	1	12	58	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
227747--227796	24	2.1	23	88	3	73	36	4	0	60	1.16
227882--227945	18	3.3	18	75	14	56	17	10	3	68	1.31
227919--227953	18	1.9	18	88	11	54	22	5	0	71	1.07
227961--228009	13	3.6	14	79	17	59	8	8	6	77	1.12
229192--229312	32	3.8	33	77	10	108	40	20	13	25	1.89
230930--231039	29	3.8	29	93	2	186	18	20	16	45	1.86
231414--231570	64	2.5	63	78	10	167	26	18	19	35	1.95
237149--237257	29	3.8	29	93	2	184	18	20	16	44	1.86
237634--237790	64	2.5	63	80	10	185	25	19	20	35	1.96
242526--242604	20	3.9	20	83	1	95	46	11	20	21	1.81
242514--242605	40	2.3	40	77	3	96	47	14	18	19	1.82
245624--245765	72	2.0	73	86	6	200	53	9	5	30	1.57
245636--245780	72	2.0	71	81	10	170	54	9	7	28	1.60
247551--247720	93	1.8	93	82	2	216	36	20	20	22	1.95
249560--249677	15	7.5	15	76	14	121	46	1	2	49	1.25
249622--249722	22	4.5	22	70	7	85	40	0	8	50	1.34
249575--249732	69	2.3	66	86	10	214	43	1	5	49	1.34
249657--250211	54	10.1	54	73	17	450	34	0	12	52	1.43
249702--250194	32	15.7	32	69	24	272	33	0	13	52	1.44
249734--249776	22	2.0	22	100	0	86	34	0	13	51	1.42
249657--250108	112	4.1	111	84	11	505	34	0	12	52	1.43
249980--250044	22	3.0	22	100	0	130	35	0	13	50	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
250088--250130	22	2.0	22	100	0	86	34	0	13	51	1.42
250002--250274	86	3.2	86	93	3	441	34	0	13	52	1.43
250229--250283	14	3.6	14	73	17	56	38	0	5	56	1.23
250221--250284	32	2.0	32	93	0	110	37	0	9	53	1.34
250299--250357	31	1.9	31	92	0	100	42	10	6	40	1.65
251624--251687	26	2.5	26	94	2	112	21	12	3	62	1.43
256269--256295	4	6.8	4	100	0	54	25	0	0	74	0.83
266399--266476	34	2.3	35	80	10	92	43	3	0	52	1.19
266651--266693	19	2.1	21	87	8	63	55	2	2	39	1.25
268014--268106	3	31.0	3	93	0	159	64	1	2	32	1.12
268419--268832	114	3.6	114	96	0	740	29	19	12	38	1.88
269517--270225	83	8.6	83	91	3	1137	36	22	13	27	1.92
269517--270225	165	4.3	167	92	3	1152	36	22	13	27	1.92
270993--271038	19	2.7	16	83	10	56	52	8	6	32	1.58
271361--271436	11	7.2	10	81	14	66	2	14	0	82	0.77
271360--271436	7	11.1	7	81	14	65	2	14	0	83	0.76
271360--271431	28	2.6	27	81	16	78	2	12	0	84	0.72
271360--271436	35	2.2	35	88	6	113	2	14	0	83	0.76

Tables:   1   2

The End!