genome.fa.s4430.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004430.1 Hibiscus syriacus cultivar Beakdansim tig00009711_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132728

Tables:   1   

This is table  1  of  1  ( 104 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4082--4119	20	1.9	19	94	5	67	36	0	23	39	1.55
6649--6688	21	1.9	21	90	10	64	55	0	7	37	1.29
10480--10554	19	3.6	19	80	16	78	25	26	18	29	1.98
10475--10536	23	2.7	23	80	9	74	29	27	17	25	1.98
11241--11270	6	5.0	6	100	0	60	33	33	0	33	1.58
15023--15082	30	2.0	30	93	6	104	33	6	16	43	1.74
15172--15196	13	1.9	13	100	0	50	16	40	20	24	1.91
15183--15239	20	2.7	23	81	10	68	22	35	21	21	1.96
15260--15336	21	3.7	21	91	1	120	22	23	25	28	1.99
15710--15779	34	2.1	32	84	5	86	34	14	27	24	1.94
16423--16477	19	2.9	19	80	0	56	41	9	20	29	1.82
17527--17615	42	2.2	40	84	8	108	33	21	22	22	1.97
19286--19329	20	2.3	19	80	7	54	63	2	0	34	1.07
25691--25781	20	4.9	20	68	20	72	34	5	15	45	1.69
25690--25839	53	2.9	52	95	3	266	32	5	13	48	1.65
25796--25835	20	2.0	20	90	0	62	37	2	12	47	1.55
31520--31558	20	2.0	20	89	0	60	38	5	15	41	1.69
31572--31611	20	2.0	21	90	5	64	35	5	15	45	1.68
31519--31668	53	2.9	52	94	3	257	33	6	12	48	1.64
31625--31664	20	2.0	20	90	9	64	37	5	10	47	1.59
32048--32091	14	2.9	15	93	6	72	47	13	22	15	1.81
34313--34413	51	2.0	51	96	0	184	34	11	21	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36177--36220	14	2.9	15	93	6	72	47	13	22	15	1.81
48644--48674	15	2.1	15	100	0	62	25	12	29	32	1.93
52524--52598	24	3.1	24	88	0	105	12	13	21	53	1.71
52523--52576	14	4.1	14	77	18	71	9	14	25	50	1.73
53679--53728	16	3.1	16	91	5	82	8	12	22	58	1.59
53679--53720	17	2.5	17	96	3	77	4	11	23	59	1.51
53798--53828	16	1.9	16	93	0	53	12	12	19	54	1.70
60141--60175	14	2.5	13	90	9	52	34	0	0	65	0.93
61595--61937	166	2.1	166	93	0	580	36	9	4	48	1.57
62559--62613	26	2.2	25	83	9	67	36	5	0	58	1.21
64668--64706	18	2.2	18	85	0	51	10	23	30	35	1.88
66291--66398	23	4.7	23	94	1	182	21	25	30	22	1.98
74256--74316	3	21.0	3	90	6	99	34	0	0	65	0.93
75740--75791	20	2.6	20	96	0	95	38	26	13	21	1.90
75781--75879	21	4.8	20	70	6	63	35	22	19	23	1.96
75847--76040	20	9.6	20	76	8	76	35	25	19	19	1.95
75847--76040	40	4.8	39	82	3	199	35	25	19	19	1.95
75847--76039	60	3.2	60	83	0	251	35	25	19	19	1.95
76421--76491	33	2.2	33	92	0	115	11	22	18	47	1.80
76612--76666	14	3.6	14	73	21	56	41	23	25	9	1.83
76612--76682	33	2.2	33	94	0	124	43	25	22	8	1.81
76678--76775	19	5.7	19	70	22	81	10	24	22	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76700--76789	14	5.7	14	74	23	81	8	25	23	42	1.83
76683--76797	33	3.5	33	95	0	212	9	24	20	45	1.81
78493--78963	93	5.1	93	97	1	903	22	12	18	46	1.83
78493--78963	185	2.6	185	98	0	917	22	12	18	46	1.83
79007--79072	19	3.4	20	87	6	91	45	27	16	10	1.80
79062--79100	14	2.8	13	88	11	60	43	28	20	7	1.79
79112--79246	19	7.6	19	75	16	128	11	19	23	45	1.82
79134--79190	14	3.7	14	77	20	60	10	21	22	45	1.82
79117--79209	33	2.8	33	95	0	168	10	20	21	47	1.80
81146--81181	14	2.6	14	95	0	63	33	0	22	44	1.53
81288--81389	19	5.6	19	84	13	151	44	17	23	14	1.86
81418--81690	19	15.4	19	81	15	345	14	20	18	46	1.83
81396--81662	52	5.0	52	91	5	428	14	21	17	46	1.84
81418--81657	108	2.3	102	82	12	167	14	21	17	46	1.83
81396--81690	33	8.5	33	75	21	155	14	20	18	46	1.84
84167--84213	24	2.0	24	87	8	69	38	21	14	25	1.92
84895--85263	20	18.5	20	86	5	451	20	18	26	34	1.96
85740--85792	21	2.5	22	72	9	56	39	5	0	54	1.24
85603--85955	167	2.1	167	94	0	607	38	7	5	48	1.55
85849--86084	131	1.8	128	83	4	294	38	6	7	47	1.59
86947--86976	14	2.1	15	93	6	53	26	0	3	70	1.03
88601--88674	5	15.4	5	77	18	61	75	0	1	22	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88598--88673	9	9.1	8	78	19	61	75	0	1	23	0.89
88598--88673	18	4.3	18	78	17	70	75	0	1	23	0.89
88598--88673	13	6.4	12	77	20	72	75	0	1	23	0.89
88648--88685	17	2.4	16	86	8	51	65	2	0	31	1.06
88692--89020	72	4.6	70	84	8	367	40	9	2	47	1.50
88691--89088	36	10.9	36	74	11	285	41	8	2	47	1.45
91282--91329	23	2.0	24	88	4	71	60	6	6	27	1.45
91507--91565	26	2.2	28	82	11	70	47	1	5	45	1.34
92232--92265	2	17.0	2	100	0	68	50	0	0	50	1.00
97747--97838	46	2.0	46	82	4	114	33	9	16	40	1.81
97793--97983	53	3.6	53	84	2	231	32	7	17	41	1.78
104270--104307	2	19.0	2	100	0	76	50	0	0	50	1.00
105360--105598	110	2.2	108	85	4	322	23	17	24	35	1.95
106342--106633	36	8.4	36	69	16	177	39	11	19	28	1.87
106260--106589	67	4.8	67	74	12	235	39	11	19	30	1.86
106260--106456	65	2.9	67	83	5	229	39	9	20	30	1.85
106351--106611	140	1.9	140	88	4	395	40	12	19	27	1.88
106443--106714	103	2.6	103	82	5	291	37	12	20	29	1.89
106617--106673	29	2.0	28	83	10	71	29	10	19	40	1.85
111340--111398	25	2.3	24	77	11	64	72	6	5	15	1.23
111559--111658	47	2.2	46	82	8	114	70	2	5	23	1.18
111653--111719	18	3.6	18	78	11	80	67	1	4	26	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111640--111715	19	4.1	18	71	14	57	71	1	3	23	1.11
111651--111721	20	3.6	20	74	11	74	67	1	4	26	1.17
111756--111807	19	2.7	19	85	5	61	61	0	3	34	1.14
111768--111809	13	2.9	15	79	17	52	64	0	2	33	1.07
111754--111812	24	2.5	24	83	5	66	62	0	3	33	1.12
111779--111856	12	6.4	12	72	18	54	67	0	5	26	1.11
113312--113353	3	14.0	3	100	0	84	33	0	0	66	0.92
119785--119834	3	16.7	3	84	15	68	36	0	0	64	0.94
119801--119846	21	2.2	21	84	0	56	47	0	0	52	1.00
121392--121431	20	2.1	19	85	4	53	32	0	2	65	1.06
123691--123726	14	2.6	14	86	0	54	30	13	2	52	1.55
127031--127066	12	2.8	13	87	8	56	86	11	2	0	0.68
127069--127103	17	2.1	17	94	0	61	80	0	20	0	0.72
129332--129547	111	1.9	111	90	3	346	31	16	19	31	1.94
132001--132039	20	2.0	20	89	0	60	30	17	10	41	1.83
132434--132728	111	2.7	110	83	5	364	40	15	17	26	1.90

Tables:   1

The End!