genome.fa.s4432.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004432.1 Hibiscus syriacus cultivar Beakdansim tig00009716_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81585

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1055--1102	17	2.9	17	87	3	62	22	0	2	75	0.91
1055--1102	16	2.9	16	84	6	60	22	0	2	75	0.91
1349--1411	27	2.3	27	83	2	81	71	1	0	26	0.95
1365--1402	15	2.5	15	95	4	67	71	0	0	28	0.87
3991--4089	42	2.4	42	78	0	117	43	17	11	28	1.83
6374--6445	32	2.2	33	81	13	96	44	4	8	43	1.53
20594--20635	21	2.0	22	85	4	59	57	2	2	38	1.25
22748--22774	12	2.2	12	100	0	54	74	0	0	25	0.83
25105--25430	36	9.4	35	77	14	261	45	3	5	45	1.44
25456--25504	14	3.4	14	81	15	64	22	4	0	73	1.00
25445--25505	5	12.2	5	81	8	63	24	3	0	72	1.00
25445--25494	19	2.5	19	87	6	64	26	2	0	72	0.96
27611--27657	21	2.2	21	100	0	94	17	46	0	36	1.48
29496--29550	23	2.5	22	81	16	69	36	3	7	52	1.47
29904--29942	20	1.9	21	89	5	62	7	28	38	25	1.83
33649--33692	21	2.1	21	83	8	54	25	13	6	54	1.63
37467--37509	20	2.2	20	86	0	59	18	6	20	53	1.67
37506--37646	46	3.1	44	88	4	201	36	7	24	32	1.82
37506--37659	45	3.4	44	86	6	202	36	7	24	31	1.83
42460--42492	17	1.9	17	100	0	66	66	0	18	15	1.25
42693--43458	110	7.0	110	91	0	1164	35	23	16	24	1.95
43565--44018	84	5.4	84	79	5	479	30	25	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43573--44063	252	1.9	251	83	4	630	31	24	18	25	1.97
44740--44801	32	1.9	32	86	3	88	40	1	8	50	1.42
44789--44822	11	3.1	11	100	0	68	44	8	8	38	1.67
44798--45158	37	10.0	37	80	11	324	47	3	4	43	1.43
45039--45119	31	2.7	29	78	17	85	45	6	4	43	1.50
45176--45231	5	11.8	5	76	16	57	17	3	0	78	0.89
45176--45231	9	5.9	10	78	14	57	17	3	0	78	0.89
45180--45226	14	3.7	13	78	21	55	21	4	0	74	0.99
45176--45227	19	2.7	19	82	11	70	19	3	0	76	0.93
45177--45231	24	2.4	24	88	11	80	18	3	0	78	0.90
48194--48329	65	2.1	67	84	5	179	50	1	2	45	1.22
48320--48349	15	2.0	15	100	0	60	60	0	0	40	0.97
48360--48411	21	2.4	21	75	15	52	48	1	3	46	1.31
49380--49499	15	8.0	15	92	0	195	50	0	0	48	1.06
49380--49542	30	5.2	30	85	10	220	47	0	2	50	1.14
49380--49543	45	3.5	45	86	6	213	47	0	2	50	1.14
49507--49542	14	2.5	14	95	4	63	41	0	0	58	0.98
49380--49542	15	10.5	15	83	9	193	47	0	2	50	1.14
49522--49619	32	3.4	32	72	26	117	35	0	9	55	1.32
49440--49597	69	2.3	67	84	6	203	42	0	5	52	1.23
49522--49802	54	5.1	54	72	22	246	34	0	12	53	1.39
49487--49587	22	4.5	22	73	7	94	38	0	7	53	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49590--49663	22	3.2	23	76	14	71	28	0	17	54	1.44
49567--49860	80	3.6	80	87	7	455	32	0	13	53	1.41
49646--49785	32	4.7	32	81	16	192	35	0	12	52	1.40
49560--49923	166	2.2	166	92	2	550	32	0	13	53	1.43
49679--49721	22	2.0	22	100	0	86	39	0	9	51	1.34
49810--49923	32	3.8	32	77	13	141	30	0	14	54	1.46
49791--49886	26	3.5	26	76	15	102	27	1	16	55	1.48
49903--49945	22	2.0	22	90	0	68	34	0	11	53	1.37
49647--49955	54	5.6	54	73	15	263	33	0	12	53	1.42
49970--50028	31	1.9	31	96	0	109	42	8	6	42	1.61
56953--57161	110	1.9	109	89	1	319	40	19	24	15	1.90
64822--65129	156	2.0	156	92	0	517	30	23	13	33	1.93
68694--68749	24	2.3	24	93	0	94	25	35	7	32	1.83
74108--74185	32	2.4	32	85	4	95	19	14	6	60	1.55
76440--76479	21	2.0	20	85	5	53	20	17	15	47	1.83

Tables:   1

The End!