Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004460.1 Hibiscus syriacus cultivar Beakdansim tig00009832_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51212

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3546--3748
103
2.0
103
91
0
325
35
22
12
28
1.91
6176--6304
65
2.0
65
83
3
161
31
17
11
39
1.85
6324--6580
102
2.5
102
91
1
390
31
18
12
37
1.88
6475--6557
37
2.3
36
81
6
87
25
20
15
38
1.92
6543--6601
30
2.0
30
83
12
77
38
15
11
33
1.84
6764--7010
84
2.9
84
76
2
246
30
23
19
26
1.98
7827--7865
14
2.7
15
88
4
53
28
0
0
71
0.86
7969--8031
2
32.5
2
85
6
76
46
3
1
49
1.27
8238--8299
23
2.7
23
80
14
65
19
4
4
70
1.23
9871--9903
17
1.9
17
88
11
50
39
12
0
48
1.40
9989--10022
18
1.9
17
94
5
59
61
0
2
35
1.11
10525--10549
13
1.9
13
100
0
50
48
0
0
52
1.00
13394--13479
29
2.9
29
94
1
145
33
13
9
43
1.77
18156--18241
29
2.9
29
94
1
145
33
13
9
43
1.77
23405--23444
12
3.3
12
85
0
62
40
10
0
50
1.36
24012--24152
59
2.4
59
84
7
187
29
18
19
33
1.95
24363--24492
60
2.2
59
83
6
156
30
16
19
33
1.94
29353--29392
20
2.0
20
90
0
62
35
22
10
32
1.87
29581--29639
31
1.9
31
89
0
91
38
33
3
23
1.72
37245--37278
15
2.2
15
89
5
50
41
5
0
52
1.25
38005--38031
13
2.1
13
100
0
54
37
0
14
48
1.45
38033--38069
19
2.1
18
90
10
58
37
10
5
45
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38398--38460
32
2.0
32
100
0
126
33
28
12
25
1.92
44719--44761
19
2.2
19
83
4
50
18
0
11
69
1.17
46560--46586
13
2.1
13
100
0
54
40
7
7
44
1.60

Tables:   1

The End!