Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004471.1 Hibiscus syriacus cultivar Beakdansim tig00009858_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  150280

Tables:   1   2   

This is table  2  of  2  ( 137 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
130065--130130
12
5.6
12
87
3
89
10
15
48
25
1.77
130065--130130
23
2.8
24
83
4
89
10
15
48
25
1.77
130221--130257
12
3.0
12
92
4
56
10
16
54
18
1.71
132603--132656
12
4.6
12
83
4
74
11
16
48
24
1.79
132654--132728
23
3.4
23
75
10
77
46
0
0
53
1.00
132676--132744
36
2.0
33
83
8
84
43
0
0
56
0.99
132745--132783
12
3.2
12
85
7
51
12
12
51
23
1.74
132746--132786
13
3.2
13
89
3
57
14
14
48
21
1.80
133569--133627
14
4.4
14
75
16
61
16
13
16
52
1.75
133569--133627
26
2.2
27
84
6
75
16
13
16
52
1.75
133849--133889
10
3.8
10
82
17
55
7
9
21
60
1.52
133849--133906
23
2.5
24
91
2
91
8
10
20
60
1.55
138144--138178
15
2.4
15
90
4
54
51
45
0
2
1.16
139878--139945
30
2.3
30
84
2
84
35
2
27
33
1.72
140791--140861
23
3.1
23
76
12
65
45
18
12
23
1.84
142649--142674
1
26.0
1
100
0
52
100
0
0
0
0.00
149032--149083
27
1.9
27
96
0
95
53
11
21
13
1.70

Tables:   1   2

The End!