genome.fa.s4476.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004476.1 Hibiscus syriacus cultivar Beakdansim tig00009865_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75530

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19702--19781	41	2.0	41	82	7	101	27	10	21	41	1.85
20428--20480	22	2.4	22	81	6	63	20	20	16	41	1.90
20878--20913	15	2.4	15	100	0	72	36	25	16	22	1.94
31126--31207	44	1.9	41	87	7	119	31	6	29	32	1.82
31128--31218	19	4.4	20	76	17	105	35	5	28	30	1.80
31642--31861	41	5.3	41	79	7	237	24	17	23	34	1.96
31748--31861	20	5.6	20	65	19	65	22	16	27	33	1.96
31650--31863	85	2.6	83	80	6	229	25	16	23	34	1.95
31588--31861	147	1.9	146	80	4	327	24	16	23	35	1.95
31748--31985	41	5.8	41	76	5	153	26	16	24	31	1.97
33143--33190	23	2.1	23	84	0	60	35	12	16	35	1.87
33570--33621	23	2.3	22	90	6	77	44	19	1	34	1.62
33580--33642	23	2.7	23	90	0	90	38	19	6	36	1.77
34046--34171	39	3.2	39	97	0	234	17	13	20	48	1.81
34430--34466	18	2.1	18	89	0	56	51	10	5	32	1.60
34714--34764	25	2.0	25	92	0	84	39	19	7	33	1.81
35029--35100	23	3.2	22	86	4	90	38	20	5	34	1.76
35457--35528	23	3.2	23	82	4	83	40	20	5	33	1.76
35892--35948	22	2.7	20	82	12	69	38	21	7	33	1.80
36309--36360	23	2.3	22	90	6	77	44	19	1	34	1.62
36319--36381	23	2.7	23	90	0	90	38	19	6	36	1.77
34793--36874	854	2.4	858	97	1	3956	39	13	8	39	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36697--36735	20	2.0	20	89	0	60	48	10	15	25	1.76
36738--36789	23	2.3	22	90	6	77	44	19	1	34	1.62
36748--36810	23	2.7	23	90	0	90	38	19	6	36	1.77
34793--36874	428	4.9	431	97	1	3966	39	13	8	39	1.74
38049--38091	22	1.9	23	90	4	70	44	13	11	30	1.80
38087--38595	181	2.8	183	93	2	848	32	16	14	36	1.89
39779--39849	3	24.0	3	78	2	72	25	35	5	33	1.79
39779--39864	12	7.0	12	77	5	64	23	34	6	34	1.82
41316--42034	198	3.7	197	96	2	1317	31	15	16	36	1.91
41988--42079	45	2.0	45	100	0	184	31	8	18	41	1.81
42236--42283	19	2.6	19	93	3	80	56	10	2	31	1.45
44150--44214	21	3.1	21	80	6	69	15	29	15	40	1.88
46440--46482	20	2.3	18	82	17	61	18	16	11	53	1.72
46445--46491	20	2.3	20	89	10	78	17	17	10	55	1.69
46471--46530	29	2.1	29	100	0	120	20	15	11	53	1.72
46642--46686	20	2.3	19	88	11	72	17	15	11	55	1.68
46753--47194	228	1.9	226	94	1	787	39	7	7	45	1.61
48578--48940	36	10.1	36	87	2	424	32	26	19	21	1.97
52632--52689	3	19.0	3	76	16	57	34	3	0	62	1.12
52632--52686	23	2.4	23	87	6	76	34	3	0	61	1.13
52632--52691	26	2.5	24	86	8	77	35	3	0	61	1.12
52906--52950	13	3.5	13	85	8	58	8	48	15	26	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55826--55855	15	1.9	16	93	6	53	43	16	6	33	1.74
56018--56101	33	2.8	29	76	20	82	47	0	3	48	1.19
56857--57083	114	2.0	114	93	0	391	21	29	18	30	1.97
57375--57418	21	2.1	21	86	0	61	29	0	15	54	1.42
57395--57457	28	2.2	30	91	5	103	30	0	11	58	1.32
57879--57939	17	3.4	17	72	16	59	42	0	11	45	1.40
61244--61564	49	6.6	49	91	4	472	41	0	12	45	1.46
61771--62055	11	23.3	11	68	23	105	43	2	8	45	1.47
61775--61836	19	3.4	19	70	22	60	38	0	9	51	1.35
61780--61836	16	3.3	17	73	22	64	38	0	10	50	1.37
61816--62055	26	9.6	26	77	10	207	44	2	7	45	1.47
61877--61927	19	2.9	17	78	18	52	39	1	11	47	1.52
61771--61979	97	2.1	97	89	6	316	43	2	8	45	1.47
62140--62260	59	2.1	56	90	4	188	38	3	8	49	1.49
62192--62278	24	3.6	25	69	23	60	41	2	8	48	1.45
62183--62224	17	2.5	17	80	0	57	40	0	2	57	1.12
63427--63460	14	2.4	14	90	0	50	50	2	0	47	1.16
64474--64506	16	2.1	16	94	5	59	57	6	0	36	1.23
64560--64665	30	3.5	30	85	5	133	45	15	1	37	1.57
64801--64836	17	2.1	17	100	0	72	41	41	0	16	1.48
65171--65244	22	3.4	22	90	3	105	29	17	45	6	1.74
65253--65337	29	2.9	29	82	3	100	20	30	34	15	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68045--68070	12	2.2	12	100	0	52	42	34	7	15	1.75
69649--69720	32	2.2	32	90	9	128	36	8	11	44	1.70
71365--71464	52	1.9	52	95	0	182	42	13	23	22	1.88

Tables:   1

The End!