Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004484.1 Hibiscus syriacus cultivar Beakdansim tig00009879_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66775

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4385--4466
29
2.8
29
88
3
121
31
12
13
42
1.81
4847--4879
13
2.6
13
95
4
59
24
24
27
24
2.00
9094--9175
29
2.8
29
94
1
137
31
13
13
41
1.83
14942--14980
13
2.7
14
84
15
53
25
15
25
33
1.95
15354--15384
14
2.2
14
94
0
53
54
12
9
22
1.67
22439--22483
22
2.0
23
86
4
65
42
6
4
46
1.50
22441--22494
22
2.5
22
81
6
56
42
5
3
48
1.44
23281--23361
33
2.5
33
82
11
98
32
23
14
29
1.95
23614--23652
2
19.5
2
100
0
78
48
0
0
51
1.00
34198--34242
21
2.1
21
87
0
63
48
6
11
33
1.65
36118--36191
2
37.0
2
100
0
148
50
0
0
50
1.00
38408--38453
23
2.0
23
87
8
67
41
8
6
43
1.61
38803--38875
23
3.2
23
92
0
110
38
21
4
35
1.73
38812--38876
23
2.8
23
95
0
112
35
23
3
38
1.70
39293--39365
23
3.2
23
92
0
119
38
21
5
34
1.77
38405--39711
490
2.7
489
97
1
2482
40
10
7
41
1.68
42103--43287
183
6.5
183
97
0
2162
32
17
14
35
1.90
44495--44569
3
25.0
3
77
0
69
22
33
8
36
1.84
44495--44586
12
7.7
12
85
0
85
21
32
8
36
1.84
44505--44586
18
4.6
18
81
3
94
19
32
9
37
1.85
46088--47020
200
4.7
200
95
0
1661
31
16
14
37
1.90
46088--47026
399
2.3
400
95
0
1664
30
16
15
37
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47137--47185
19
2.6
19
96
0
89
55
10
2
32
1.45
48976--49036
32
1.9
32
89
0
95
22
47
0
29
1.52
49069--49133
21
3.1
21
93
0
103
16
30
10
41
1.83
51342--51389
20
2.4
20
82
6
53
22
12
8
56
1.63
51515--51561
20
2.3
20
89
10
78
17
17
10
55
1.69
51301--51772
181
2.6
180
88
1
658
26
16
13
43
1.85
52253--52319
30
2.3
30
87
7
93
37
7
11
43
1.70
57417--57482
21
3.2
20
69
4
60
15
18
25
40
1.89
58096--58122
6
4.5
6
100
0
54
0
14
51
33
1.43
58220--58269
21
2.4
21
93
3
84
46
18
14
22
1.84
63964--64009
23
2.0
23
87
8
67
45
19
21
13
1.84

Tables:   1

The End!