genome.fa.s4485.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004485.1 Hibiscus syriacus cultivar Beakdansim tig00009884_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129693

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
875--945	28	2.4	29	77	13	74	42	9	9	38	1.71
2994--3174	88	2.0	91	92	4	305	24	13	19	43	1.86
17229--17412	93	1.9	93	86	3	260	23	14	38	24	1.92
22224--22300	31	2.5	31	91	0	118	36	12	24	25	1.92
23170--23195	12	2.2	12	100	0	52	30	30	0	38	1.58
23339--23363	9	2.8	9	100	0	50	28	12	0	60	1.32
23586--23674	45	1.9	48	84	11	123	44	3	17	33	1.66
23808--23953	60	2.5	59	85	7	181	38	14	11	35	1.82
25622--25667	2	23.0	2	100	0	92	50	0	0	50	1.00
25676--25718	21	2.0	21	86	0	59	30	0	9	60	1.28
34437--34497	31	2.0	31	83	0	77	45	6	4	42	1.51
40577--40638	20	2.9	21	83	7	72	16	24	37	22	1.94
44446--44485	21	1.9	21	85	10	55	35	10	2	52	1.48
52722--52777	14	4.3	14	80	17	75	8	14	25	51	1.70
52723--52784	24	2.6	24	94	0	106	9	12	24	53	1.69
52723--52791	24	2.9	23	89	2	93	11	13	21	53	1.70
53644--53684	11	3.6	11	87	6	64	26	21	26	24	2.00
53914--53946	16	2.1	16	94	0	57	9	18	21	51	1.73
53918--53974	16	3.6	16	80	0	60	10	10	21	57	1.61
54048--54080	16	2.1	16	100	0	66	6	12	24	57	1.57
55509--55564	27	2.1	27	83	6	69	44	3	5	46	1.43
55612--55692	32	2.5	33	73	13	87	54	2	2	40	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56208--56236	14	2.1	14	100	0	58	44	0	20	34	1.52
57029--57066	17	2.1	19	85	9	53	39	10	0	50	1.37
61570--61615	20	2.3	20	84	0	56	13	32	54	0	1.39
88073--88118	22	2.1	22	83	0	56	41	19	2	36	1.64
91326--91485	84	1.9	84	89	2	250	42	8	18	30	1.79
93690--93829	42	3.5	42	69	20	136	22	19	17	40	1.91
93638--93864	77	2.9	77	87	1	321	24	18	17	39	1.92
93743--93966	35	6.3	35	74	11	186	22	20	17	39	1.92
93795--93967	67	2.5	67	85	4	204	21	21	16	39	1.92
98901--98938	19	2.0	19	85	10	51	13	31	0	55	1.38
100716--100778	32	2.0	32	83	0	81	30	14	23	31	1.94
101984--102038	10	5.6	10	83	14	62	58	0	30	10	1.33
101984--102036	19	2.7	20	85	14	74	58	0	30	11	1.33
102332--102361	14	2.1	14	100	0	60	43	0	16	40	1.48
102969--103001	8	4.1	8	100	0	66	60	0	12	27	1.32
102999--103112	59	1.9	59	82	3	140	44	14	7	34	1.72
103540--103615	35	2.2	35	87	0	107	40	21	1	36	1.61
104009--104253	130	1.9	130	93	0	418	35	14	13	36	1.85
104020--104284	130	2.0	129	81	4	309	38	12	13	34	1.83
104581--104643	28	2.3	27	78	8	63	46	1	3	49	1.27
104721--104753	16	2.0	17	88	5	50	63	6	3	27	1.32
104874--104916	21	2.0	21	100	0	86	39	0	13	46	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104885--104970	35	2.5	35	84	0	100	37	1	20	40	1.61
106891--106946	25	2.2	25	93	0	94	23	19	26	30	1.98
123414--123445	16	2.0	16	100	0	64	25	18	0	56	1.42
127834--128021	91	2.0	92	94	5	333	32	21	13	32	1.92
128293--128318	6	4.3	6	100	0	52	65	0	34	0	0.93

Tables:   1

The End!