genome.fa.s4490.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004490.1 Hibiscus syriacus cultivar Beakdansim tig00009899_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80502

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2935--3043	56	1.9	56	92	0	182	30	23	11	34	1.90
6010--6047	15	2.6	14	88	12	58	42	0	0	57	0.98
6038--6075	18	2.1	18	85	9	51	65	2	0	31	1.06
7020--7091	23	3.2	23	76	9	69	45	2	0	51	1.15
8610--9635	183	5.6	182	88	1	1441	43	13	15	27	1.84
10023--10067	19	2.4	19	92	3	74	42	0	20	37	1.52
10318--10356	18	2.2	18	86	9	53	46	5	7	41	1.55
11317--11372	24	2.5	22	77	13	60	42	1	5	50	1.35
12033--12071	18	2.2	18	90	0	60	53	0	38	7	1.30
13544--13592	19	2.6	19	90	3	73	30	2	10	57	1.43
13941--14832	199	4.5	199	94	0	1509	42	15	15	27	1.86
17024--18276	199	6.3	198	90	3	1874	43	14	14	27	1.84
17024--18276	399	3.2	397	89	3	1914	43	14	14	27	1.84
21070--21509	173	2.5	176	89	4	647	43	12	16	27	1.84
22134--22181	23	2.1	23	92	0	78	39	14	8	37	1.76
25069--25171	36	2.9	36	88	1	145	41	13	15	29	1.85
26970--27003	6	5.7	6	100	0	68	70	0	29	0	0.87
39908--39947	19	2.2	18	86	4	53	60	0	10	30	1.30
40025--40084	3	20.3	3	96	3	113	66	0	0	33	0.92
40160--40194	16	2.2	16	89	0	52	65	5	14	14	1.44
41843--42200	134	2.7	134	91	1	576	24	17	31	26	1.97
41954--42140	43	4.2	43	66	22	118	24	17	32	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42487--42543	29	1.9	30	92	3	98	45	10	12	31	1.76
42407--42633	91	2.5	90	81	8	264	45	13	12	28	1.80
42579--42721	29	4.8	29	81	7	137	47	14	11	26	1.78
42659--42721	33	1.9	33	86	0	90	42	12	14	30	1.82
42734--42922	64	3.0	63	78	12	199	44	16	9	29	1.79
42886--42958	36	2.0	36	84	5	94	35	12	12	39	1.80
42836--43015	99	1.8	100	84	3	247	43	13	12	30	1.81
42987--43045	31	1.9	31	93	3	102	42	11	13	32	1.81
43081--43184	36	2.9	36	84	4	147	35	11	18	34	1.87
43160--43472	107	3.0	105	79	7	364	40	9	16	32	1.82
43431--43543	36	3.2	35	81	8	129	40	10	18	30	1.84
49331--49370	19	2.2	18	86	4	53	60	0	10	30	1.30
49421--49455	2	17.5	2	87	0	52	54	2	0	42	1.15
49415--49447	16	2.1	16	100	0	66	57	6	0	36	1.23
50098--50155	29	2.0	29	96	0	107	17	31	22	29	1.96
51623--51770	79	1.9	79	92	0	251	33	10	21	34	1.87
53088--53535	144	3.1	144	83	2	524	29	20	15	34	1.93
61479--61503	4	6.2	4	100	0	50	24	0	0	76	0.80
61714--61750	16	2.2	18	85	9	51	67	5	5	21	1.31
62346--62385	19	2.2	18	86	4	53	60	0	10	30	1.30
62450--62485	3	12.3	3	94	5	65	66	0	0	33	0.92
62561--62595	16	2.2	16	89	0	52	65	5	14	14	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64226--64583	134	2.7	134	91	1	567	24	17	31	26	1.97
64337--64523	43	4.2	43	66	22	118	24	17	32	25	1.97
64870--65071	29	6.8	30	71	19	120	46	13	12	27	1.79
64790--65016	91	2.5	90	82	8	264	45	14	12	27	1.81
64962--65103	29	4.8	29	79	9	126	47	14	11	26	1.78
65042--65104	33	1.9	33	86	0	90	42	12	14	30	1.82
65117--65304	63	3.0	60	81	14	202	44	15	10	29	1.79
65268--65338	36	2.0	36	83	5	90	35	11	12	40	1.79
65216--65397	99	1.8	99	80	3	213	43	12	12	30	1.80
65369--65427	31	1.9	31	93	3	102	42	11	13	32	1.81
65465--65567	36	2.8	36	83	4	145	35	11	17	34	1.86
65543--65855	107	3.0	105	80	7	373	40	10	16	32	1.82
65814--65926	36	3.2	35	81	8	129	40	10	18	30	1.84
66193--66232	16	2.5	16	87	0	53	22	5	27	45	1.73
71690--71729	19	2.2	18	86	4	53	60	0	10	30	1.30
71780--71826	2	23.5	2	91	0	76	53	2	0	44	1.12
71774--71826	14	3.8	14	94	0	70	54	3	0	41	1.18
72469--72555	29	3.0	29	98	0	165	17	31	22	28	1.97
73452--73495	3	14.7	3	86	9	54	70	4	0	25	1.06
73451--73498	15	3.2	15	80	11	62	72	4	0	22	1.01
74028--74175	79	1.9	79	91	0	242	33	10	21	35	1.87
75493--75939	144	3.1	144	83	2	524	29	19	15	34	1.93

Tables:   1

The End!