Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004513.1 Hibiscus syriacus cultivar Beakdansim tig00009952_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74024

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17--68
21
2.5
21
96
3
97
19
5
30
44
1.74
1997--2056
25
2.4
25
91
0
102
28
16
20
35
1.94
9233--9278
20
2.3
20
96
0
83
0
6
10
82
0.83
9242--9280
10
3.9
10
79
0
51
0
5
7
87
0.68
13150--13201
26
2.0
26
81
11
61
50
1
13
34
1.53
16254--16295
20
2.2
20
95
4
77
38
11
4
45
1.62
16837--16861
12
2.1
12
100
0
50
20
16
0
64
1.30
17340--17375
17
2.1
17
89
0
54
30
30
0
38
1.58
19834--19887
21
2.6
21
85
2
65
35
12
5
46
1.66
20381--20405
12
2.1
12
100
0
50
20
16
0
64
1.30
20641--20690
11
4.5
11
76
20
50
80
2
16
2
0.91
20640--20680
12
3.4
12
83
10
57
82
2
12
2
0.86
20639--20690
24
2.2
24
86
13
72
80
1
15
1
0.88
26344--26393
24
2.0
25
88
3
75
32
6
6
56
1.48
27961--28010
8
5.9
8
79
11
55
78
2
20
0
0.86
27966--28012
13
3.6
13
80
11
60
78
2
19
0
0.85
27960--28010
26
2.0
26
92
0
84
78
1
19
0
0.85
27963--28013
18
2.7
18
87
9
66
78
1
19
0
0.85
30924--30973
24
2.0
25
88
3
75
32
6
6
56
1.48
42691--42724
16
2.1
17
89
10
54
50
2
29
17
1.61
43503--43577
35
2.1
35
90
4
116
29
4
38
28
1.75
47512--47548
17
2.2
17
90
9
58
5
10
2
81
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47579--47623
22
2.1
20
88
12
63
0
13
4
82
0.82
48006--48085
35
2.2
36
93
2
135
27
3
38
30
1.74
54279--54328
24
2.1
24
88
3
75
56
16
14
14
1.69
56993--57018
13
2.0
13
100
0
52
38
7
30
23
1.83
57278--57458
91
2.0
91
81
6
215
22
25
22
29
1.99
65143--65203
2
30.5
2
100
0
122
50
0
0
49
1.00
65574--65611
20
1.9
20
88
0
58
7
13
2
76
1.11

Tables:   1

The End!