genome.fa.s4514.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004514.1 Hibiscus syriacus cultivar Beakdansim tig00009953_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  180164

Tables:   1   

This is table  1  of  1  ( 92 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8480--8542	23	2.8	22	76	7	63	23	28	22	25	1.99
9156--9190	17	2.1	17	88	0	52	22	22	5	48	1.72
10795--10853	29	2.0	29	96	0	109	44	3	25	27	1.70
17006--17167	41	4.0	41	76	6	175	35	23	10	30	1.89
17030--17356	41	8.0	41	85	2	388	33	22	11	32	1.90
21349--21481	39	3.4	38	76	4	122	20	25	20	33	1.97
22304--22580	151	1.8	151	84	6	382	35	10	16	37	1.82
22402--22763	181	2.0	181	91	1	582	38	10	12	38	1.78
24817--24871	28	1.9	29	96	3	103	36	12	14	36	1.84
31070--31352	142	2.0	142	93	0	485	32	16	12	38	1.87
32136--32458	55	5.9	55	88	1	452	28	20	19	30	1.97
32136--32458	109	3.0	110	88	3	463	28	20	19	30	1.97
32136--32452	164	1.9	164	87	1	456	29	20	19	30	1.97
32326--32411	27	3.1	27	61	26	63	27	22	22	27	1.99
32798--33006	95	2.2	96	90	2	325	28	24	16	31	1.96
39325--39375	20	2.6	20	84	3	68	33	15	7	43	1.76
42230--42280	20	2.6	20	90	3	77	35	15	5	43	1.71
42994--43045	8	6.5	8	87	12	72	78	0	19	1	0.84
46364--46414	20	2.6	20	84	3	68	33	15	7	43	1.76
51765--51815	27	1.9	27	88	4	77	37	15	15	31	1.89
55927--55990	29	2.2	29	81	8	78	46	0	15	37	1.46
57539--57792	138	1.8	138	81	1	312	24	17	21	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57678--57875	82	2.4	82	80	7	233	22	19	20	37	1.94
57528--58094	219	2.6	219	85	1	735	23	17	22	35	1.95
57897--58126	82	2.8	81	87	3	320	20	18	23	38	1.93
59160--59202	12	3.7	11	90	6	59	4	11	0	83	0.78
65659--65699	21	1.9	22	85	5	57	14	17	7	60	1.55
75410--75451	22	1.9	22	100	0	84	28	19	7	45	1.76
75410--75458	22	2.2	22	92	0	80	24	18	10	46	1.79
77330--77367	20	1.9	20	88	0	58	23	2	2	71	1.12
83758--83830	36	2.0	36	94	0	128	56	13	13	16	1.68
85264--85335	36	2.0	35	81	7	83	47	2	0	50	1.15
87113--87178	24	2.8	24	80	0	69	54	15	13	16	1.71
87220--87256	19	1.9	19	94	0	65	43	10	10	35	1.75
91501--91573	34	2.1	34	89	0	110	61	13	4	20	1.48
94535--94645	36	3.1	36	85	2	134	54	19	9	17	1.69
95488--95559	32	2.2	32	87	0	99	43	8	12	36	1.73
95630--95709	32	2.5	33	85	6	101	38	7	17	36	1.78
95383--95830	142	3.2	140	84	3	528	38	6	18	36	1.76
95639--95709	33	2.2	32	87	2	97	39	7	19	33	1.79
95383--95831	141	3.2	139	82	5	512	38	6	18	36	1.76
99363--99477	40	2.9	39	80	2	140	37	15	0	46	1.46
105598--106661	530	2.0	530	100	0	2128	25	23	16	33	1.96
107919--108016	38	2.6	38	91	3	162	33	25	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109022--109062	16	2.6	16	88	3	57	36	12	21	29	1.90
110589--110734	59	2.4	59	82	6	161	43	6	18	31	1.76
111683--111716	17	1.9	18	88	5	52	47	14	0	38	1.45
116479--116524	24	2.0	23	86	4	65	28	8	0	63	1.24
116753--116816	30	2.1	30	88	0	92	23	18	39	18	1.93
117598--117664	30	2.2	30	94	0	116	19	41	17	20	1.90
120810--121147	40	8.8	34	77	16	160	47	0	9	42	1.39
120820--121149	79	4.2	78	91	5	474	48	0	8	42	1.39
120810--121149	76	4.4	77	90	5	255	47	0	9	42	1.39
121738--121788	22	2.3	22	83	6	59	68	11	13	5	1.37
124456--124502	19	2.3	20	75	10	51	40	6	23	29	1.79
128410--128579	43	4.0	43	90	1	270	27	14	24	34	1.94
128410--128579	85	2.0	86	90	1	270	27	14	24	34	1.94
128431--128627	85	2.3	84	81	5	207	30	11	22	34	1.90
129774--130066	67	4.4	67	84	0	334	28	22	17	31	1.96
129768--130066	134	2.2	134	83	0	373	28	22	17	31	1.96
130008--130063	29	1.9	29	89	7	87	28	25	19	26	1.99
130062--130318	88	2.9	88	87	2	390	29	21	20	28	1.98
130763--130896	40	3.5	40	87	7	204	47	0	10	41	1.38
130753--131088	39	9.1	37	76	16	299	46	0	9	43	1.41
130753--130896	77	1.9	75	94	2	252	47	0	11	41	1.39
130880--130918	2	19.5	2	100	0	78	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130908--131069	80	2.1	72	84	11	209	45	0	10	43	1.43
131712--131762	26	2.0	26	84	7	68	64	23	11	0	1.26
143957--143996	21	1.9	21	94	0	71	30	15	7	47	1.72
143991--144089	33	3.0	33	94	1	164	32	7	15	45	1.73
144075--144129	13	4.2	13	75	13	58	34	3	12	49	1.59
144526--144581	15	3.6	15	79	9	67	32	12	12	42	1.80
144545--144578	18	1.9	18	94	5	61	38	11	11	38	1.79
144672--144703	16	2.0	17	88	11	50	43	21	21	12	1.86
148695--148732	16	2.3	17	86	4	51	34	13	2	50	1.55
149780--150458	2	333.0	2	63	23	122	45	4	5	44	1.48
149767--149842	23	3.3	21	77	21	80	43	1	6	48	1.37
149805--149924	7	16.9	7	80	12	129	53	2	1	42	1.24
150140--150203	9	6.9	9	76	13	58	40	1	9	48	1.45
150216--150301	42	2.0	42	90	0	136	41	3	10	44	1.56
150420--150458	15	2.8	14	88	7	53	46	2	0	51	1.14
151122--151150	12	2.3	13	94	5	51	68	0	0	31	0.89
155281--155314	12	2.8	13	91	8	54	67	0	11	20	1.21
158054--158101	19	2.3	20	79	17	53	41	2	6	50	1.39
159234--159258	5	5.0	5	100	0	50	20	0	0	80	0.72
172126--172173	15	3.2	15	96	0	87	29	33	22	14	1.94
172258--172356	29	3.4	29	97	1	182	18	21	15	45	1.85
172343--172411	24	2.8	26	83	12	85	31	24	5	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172376--172411	12	3.0	12	91	0	63	36	25	5	33	1.79
172721--172897	64	2.8	64	85	1	221	25	20	22	31	1.98
172784--172945	64	2.5	64	87	4	211	26	22	19	30	1.98
176940--177061	40	3.0	40	96	0	217	35	27	13	23	1.93

Tables:   1

The End!