Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004535.1 Hibiscus syriacus cultivar Beakdansim tig00010014_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69438

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13974--14023
3
16.7
3
91
0
82
66
2
0
32
1.03
14187--14301
38
2.8
40
75
12
119
26
20
28
24
1.99
14333--14534
43
4.6
43
67
19
119
20
19
33
26
1.97
14226--14669
135
3.3
135
93
0
714
22
19
32
25
1.97
14726--14882
66
2.4
64
78
10
165
38
13
20
28
1.90
14921--15065
65
2.2
62
80
6
146
42
12
10
34
1.77
15018--15097
38
2.1
39
86
6
110
38
10
13
37
1.79
15321--15403
30
2.8
30
83
1
87
40
12
20
26
1.87
15707--15832
36
3.5
36
87
2
182
38
11
19
31
1.86
16436--17840
4
353.5
4
98
1
2747
25
0
24
49
1.50
19023--19105
14
5.8
14
78
14
80
3
14
7
74
1.16
19029--19105
29
2.7
29
86
6
95
3
15
6
74
1.18
19084--19165
31
2.6
31
81
11
94
2
17
8
71
1.21
19055--19173
46
2.6
46
74
10
118
2
15
8
73
1.19
20395--20432
19
2.0
20
89
5
60
47
13
18
21
1.82
22966--23086
30
4.1
30
73
13
97
57
9
14
19
1.64
23854--23888
18
1.9
18
88
0
52
31
40
2
25
1.70
24538--24588
3
17.0
3
91
0
84
64
1
0
33
1.05
29511--29591
2
40.5
2
100
0
162
49
0
0
50
1.00
31558--31615
3
20.0
3
85
7
84
62
0
1
36
1.06
31764--31812
20
2.4
20
86
3
62
30
18
22
28
1.97
31877--31931
20
2.8
20
74
0
56
29
16
23
30
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31747--32034
118
2.4
120
88
1
438
34
17
16
31
1.92
31939--32134
99
2.0
100
94
1
349
33
18
16
31
1.93
42127--42151
12
2.1
12
100
0
50
52
0
32
16
1.44
42185--42224
21
2.0
20
90
9
64
27
17
20
35
1.95
45716--45763
3
16.7
3
82
8
64
60
0
2
37
1.09
55245--55304
20
2.9
21
90
7
95
30
25
26
18
1.98
55338--55382
22
2.0
22
86
4
63
28
31
26
13
1.94
56668--56885
103
2.1
103
96
0
400
26
13
23
36
1.92
56902--56969
23
3.0
23
86
0
91
22
27
25
25
1.99
62190--62411
111
2.0
111
94
1
392
45
10
8
36
1.68
65268--65338
34
2.1
35
84
7
92
50
4
0
45
1.21
69164--69196
16
2.1
16
94
0
57
66
0
0
33
0.92
69160--69248
34
2.5
35
76
8
92
59
1
1
38
1.12
69211--69279
21
3.0
23
79
14
72
55
1
0
43
1.08
69211--69364
12
12.8
12
69
22
83
55
2
0
40
1.18
69206--69364
58
2.7
60
84
12
199
55
2
1
40
1.21

Tables:   1

The End!