Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004545.1 Hibiscus syriacus cultivar Beakdansim tig00010086_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62055

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2786--2818
15
2.2
15
89
10
50
36
15
0
48
1.45
7607--7641
15
2.3
15
100
0
70
31
0
57
11
1.34
7634--7664
15
2.1
15
93
0
53
19
0
70
9
1.14
9239--9299
28
2.3
27
83
11
72
50
6
4
37
1.50
13565--13598
18
1.9
18
88
5
52
26
26
8
38
1.85
13925--13982
27
2.1
27
81
6
64
31
0
0
68
0.89
13925--13972
13
3.6
13
81
13
62
29
0
0
70
0.87
13925--13994
14
4.9
15
74
20
53
34
0
0
65
0.93
16374--16416
3
14.3
3
85
9
61
34
0
2
62
1.08
16374--16414
18
2.3
19
91
8
68
36
0
2
60
1.10
18385--18421
5
7.2
5
90
3
56
16
2
2
78
0.98
19665--19717
7
7.6
7
100
0
106
43
13
28
15
1.84
21396--21436
18
2.3
18
100
0
82
39
19
24
17
1.92
23767--23845
42
1.9
42
84
5
108
24
11
21
43
1.85
23938--23980
6
7.2
6
100
0
86
34
32
0
32
1.58
23977--24138
6
27.5
6
93
3
213
25
57
16
0
1.40
23947--23986
18
2.2
18
90
0
62
35
37
2
25
1.69
34252--34318
32
2.1
32
88
0
98
16
38
8
35
1.80
36383--36420
20
1.9
20
94
0
67
26
13
15
44
1.83
39177--39236
19
3.0
20
88
9
86
28
23
20
28
1.99
44972--45032
21
2.7
23
75
14
74
26
27
16
29
1.97
47740--47798
22
2.8
22
87
5
86
28
28
16
25
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51954--51986
15
2.3
15
89
5
50
60
9
9
21
1.54
54348--54392
21
2.1
21
91
0
72
22
4
17
55
1.60
54352--54402
21
2.4
21
83
0
66
23
7
21
47
1.77
54578--54666
45
2.0
44
91
4
144
35
16
14
32
1.90
57744--57796
28
1.9
28
81
11
65
26
16
11
45
1.82
58512--58578
22
3.0
22
95
0
116
29
23
20
25
1.99
58556--60601
766
2.7
770
93
2
3495
32
18
10
37
1.86

Tables:   1

The End!