Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004559.1 Hibiscus syriacus cultivar Beakdansim tig00010133_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65596

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1074--1117
18
2.6
16
79
13
52
72
0
11
15
1.11
8832--8865
6
5.7
6
92
0
59
14
50
0
35
1.44
10625--10671
2
24.0
2
81
12
53
55
2
0
42
1.12
10631--10681
25
2.1
24
85
7
68
58
1
0
39
1.09
14261--14353
22
4.3
22
81
6
82
41
25
7
24
1.81
15116--15166
26
1.9
26
84
11
68
62
3
7
25
1.40
15184--15226
14
2.9
14
80
10
50
65
4
2
27
1.25
15183--15243
30
2.0
31
81
9
72
59
6
6
27
1.48
15344--15385
2
21.0
2
100
0
84
50
0
0
50
1.00
17356--17540
2
93.5
2
74
16
154
45
4
2
47
1.36
17429--17540
25
4.5
25
74
9
104
50
3
0
45
1.25
19733--19767
17
2.1
17
100
0
70
17
5
5
71
1.25
19907--19940
13
2.7
13
95
4
61
32
0
8
58
1.29
19960--19990
13
2.4
13
100
0
62
41
6
6
45
1.55
19907--20015
42
2.5
43
80
10
114
37
3
9
49
1.52
19907--20019
11
10.4
11
69
20
69
38
3
8
49
1.51
19973--20010
20
1.9
20
88
0
58
42
2
7
47
1.46
20165--20229
26
2.5
26
87
7
96
47
3
4
44
1.39
20209--20361
61
2.7
57
82
9
163
42
3
4
49
1.39
20294--20344
26
1.9
26
92
4
84
45
1
3
49
1.32
20314--20382
18
3.7
20
70
20
67
43
7
4
44
1.51
20320--20389
36
2.0
35
91
2
113
41
7
4
47
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47019--47048
8
3.6
8
95
4
51
86
0
0
13
0.57
47545--47619
35
2.1
35
90
0
114
34
0
21
44
1.53
50171--50255
39
2.2
39
85
4
109
48
1
15
35
1.53
50189--50289
39
2.6
40
76
6
100
50
0
13
34
1.49
51004--51432
36
11.6
36
78
14
330
44
3
6
45
1.47
51041--51353
77
4.0
81
79
16
301
44
4
6
45
1.49
51082--51291
41
5.1
43
77
16
144
43
4
6
45
1.49
51243--51355
34
3.2
34
90
7
156
47
4
5
42
1.46
51447--51507
23
2.6
23
81
5
59
21
1
3
73
1.06
52757--52822
29
2.3
27
80
17
71
16
13
7
62
1.53
52825--52863
2
19.5
2
100
0
78
48
0
0
51
1.00
52894--52922
2
14.5
2
100
0
58
48
0
0
51
1.00
57590--58440
84
10.1
84
86
1
1033
35
21
17
24
1.95
58975--59008
2
17.0
2
100
0
68
50
0
0
50
1.00
59034--59292
36
7.2
36
83
11
304
44
4
6
45
1.49
59114--59290
69
2.5
69
91
4
284
44
5
5
44
1.51
59385--59412
3
9.3
3
100
0
56
32
0
0
67
0.91
59410--59450
20
2.0
22
90
9
68
19
4
0
75
0.98
60404--60428
7
3.6
7
100
0
50
0
44
0
56
0.99
60709--60770
29
2.1
28
80
16
65
19
16
8
56
1.64
60770--60824
2
27.5
2
100
0
110
49
0
0
50
1.00
62460--62512
26
2.0
26
100
0
106
26
18
7
47
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62782--62806
11
2.3
11
100
0
50
8
8
0
84
0.79

Tables:   1

The End!