genome.fa.s4590.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004590.1 Hibiscus syriacus cultivar Beakdansim tig00010251_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93519

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4231--4280	24	2.1	24	85	7	66	26	2	12	60	1.43
6641--6675	15	2.3	15	100	0	70	42	22	5	28	1.76
7040--7090	24	2.2	23	85	3	66	33	19	27	19	1.96
7081--7182	23	4.5	22	78	7	96	35	23	24	16	1.95
7081--7182	46	2.2	46	78	3	116	35	23	24	16	1.95
9501--9585	23	3.7	23	80	3	91	32	20	20	27	1.97
13019--13064	20	2.4	19	81	3	56	23	6	2	67	1.25
16506--16548	19	2.3	19	84	8	52	44	4	9	41	1.57
28004--28028	2	12.5	2	100	0	50	48	0	0	52	1.00
31514--31677	41	3.9	42	80	4	170	25	9	7	57	1.57
38498--39211	91	7.9	91	88	1	993	24	22	16	36	1.94
39616--39799	66	2.8	67	80	7	205	39	13	21	25	1.90
39605--39869	67	3.9	66	78	10	225	38	12	19	29	1.89
39641--39869	69	3.4	66	79	8	196	39	13	18	27	1.89
39750--39905	36	4.4	36	76	8	151	38	12	17	31	1.87
39855--40037	65	2.8	66	79	4	199	38	14	20	25	1.91
39987--40075	36	2.4	36	83	10	117	42	13	16	26	1.86
40220--40396	89	2.0	90	93	1	302	35	20	17	25	1.95
40230--40667	170	2.5	172	90	6	661	34	21	18	25	1.96
40401--40667	89	3.0	89	94	1	462	34	21	18	25	1.96
42595--42633	11	3.5	11	85	0	51	2	12	5	79	1.00
45625--45667	18	2.4	18	80	7	52	39	2	6	51	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48513--48583	33	2.2	33	100	0	142	38	8	26	26	1.85
48998--49049	23	2.3	23	96	0	95	15	7	44	32	1.75
51990--52356	131	2.8	131	84	1	466	40	17	10	30	1.84
55041--55076	3	12.0	3	100	0	72	33	0	0	66	0.92
56191--56230	13	3.0	13	78	7	53	40	20	22	17	1.92
56232--56297	14	4.7	14	70	7	53	28	18	25	27	1.98
56232--56306	28	2.6	28	83	6	89	28	16	25	30	1.96
56939--57036	39	2.5	40	86	5	137	33	13	11	41	1.80
56939--57055	39	3.0	38	82	6	119	31	12	13	41	1.82
59825--59862	17	2.2	17	86	9	51	44	15	0	39	1.47
60443--60513	23	3.0	24	87	4	99	23	32	8	35	1.85
60781--60891	33	3.4	33	80	0	114	36	9	18	36	1.82
67593--67621	2	14.5	2	100	0	58	48	0	0	51	1.00
71010--71116	33	3.0	33	84	11	124	14	8	33	43	1.75
72084--72148	30	2.2	30	94	0	112	33	16	18	30	1.94
78443--78481	14	2.7	15	80	11	55	46	5	15	33	1.68
78951--79011	22	2.6	24	79	5	72	18	22	32	26	1.97
85314--85423	43	2.5	43	75	19	102	41	16	1	40	1.59

Tables:   1

The End!