genome.fa.s4614.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004614.1 Hibiscus syriacus cultivar Beakdansim tig00010320_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  491648

Tables:   1   2   

This is table  1  of  2  ( 139 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25298--25371	5	15.8	5	71	18	61	1	20	2	75	1.00
25295--25366	11	6.5	11	73	13	58	1	20	2	75	1.01
25295--25330	16	2.2	17	85	14	58	0	22	0	77	0.76
25305--25371	8	7.9	8	74	22	57	1	20	2	74	1.03
25306--25371	16	3.8	17	79	16	66	1	21	3	74	1.04
25291--25364	27	2.7	27	83	12	80	1	22	2	72	1.04
25322--25373	17	2.9	18	81	18	65	1	19	5	73	1.14
31718--31760	21	2.1	20	91	4	68	76	2	20	0	0.89
31712--31763	18	3.1	18	71	18	58	78	3	17	0	0.89
31715--31765	6	8.2	6	75	16	50	78	1	19	0	0.85
33031--33206	90	2.0	89	89	1	271	36	11	6	44	1.68
35510--35551	20	2.0	22	90	9	70	23	19	11	45	1.83
48424--48461	1	38.0	1	89	0	58	0	0	5	94	0.30
50242--50285	10	4.4	10	91	0	70	0	13	11	75	1.06
58747--58851	36	2.9	36	91	1	167	30	36	4	28	1.78
62757--62861	36	2.9	36	90	1	158	29	36	5	28	1.80
66762--66864	36	2.9	36	89	1	154	31	35	3	29	1.75
69168--69239	11	6.5	11	75	12	58	75	1	20	2	1.01
69163--69243	19	4.4	19	75	15	66	74	1	22	2	1.01
69163--69236	5	15.8	5	71	18	61	75	1	20	2	1.00
69163--69229	8	7.9	8	74	22	57	74	1	20	2	1.03
69163--69236	13	5.3	15	70	16	61	75	1	20	2	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69204--69236	16	2.1	16	94	5	59	78	0	21	0	0.75
77993--78097	36	2.9	36	91	1	167	30	36	4	28	1.78
82027--82123	36	2.7	36	93	1	160	29	36	5	28	1.79
84636--84720	11	7.2	11	72	22	66	32	35	2	29	1.70
84633--84737	36	2.9	36	90	1	158	31	36	3	28	1.75
95206--95256	20	2.6	20	90	3	77	35	15	5	43	1.71
100996--101075	35	2.2	36	93	2	135	27	3	38	30	1.74
105479--105558	36	2.2	36	91	2	126	28	3	37	30	1.75
108168--108207	20	1.9	22	90	10	66	25	20	10	45	1.81
109560--109604	11	4.1	11	82	5	56	71	4	11	13	1.29
109560--109601	22	1.9	22	90	9	68	69	4	11	14	1.34
115832--115859	11	2.5	11	100	0	56	0	0	7	92	0.37
116181--116225	11	4.1	11	82	5	56	71	4	11	13	1.29
116181--116222	22	1.9	22	90	9	68	69	4	11	14	1.34
136858--136900	22	2.0	23	86	9	63	16	6	11	65	1.46
145883--145924	22	1.9	22	85	0	57	45	16	0	38	1.48
146304--146395	45	2.0	45	82	0	112	26	16	19	38	1.92
150071--150100	13	2.4	13	94	5	53	26	30	0	43	1.55
158779--158810	16	2.0	16	100	0	64	43	6	18	31	1.75
163842--163874	16	2.1	16	100	0	66	42	6	18	33	1.75
166340--166382	23	1.9	21	81	13	50	32	18	13	34	1.90
168083--168254	91	1.9	91	84	7	233	22	26	21	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180099--180142	20	2.2	20	84	8	54	63	0	20	15	1.31
182875--183446	285	2.0	285	100	0	1144	20	21	29	27	1.98
184158--184204	6	8.2	6	77	17	55	0	14	2	82	0.75
184160--184204	17	2.7	16	83	16	56	0	13	2	84	0.72
184158--184204	23	2.0	24	88	8	71	0	14	2	82	0.75
186928--186987	30	2.0	31	83	3	77	51	10	8	30	1.64
192011--192044	11	3.1	11	91	0	50	55	0	23	20	1.43
192630--192663	11	3.1	11	91	0	50	52	0	23	23	1.47
192115--194208	827	2.6	815	83	5	2722	37	13	18	30	1.89
200068--200112	23	1.9	24	90	4	74	22	13	0	64	1.28
200374--200445	11	6.5	11	73	12	58	75	4	19	1	1.05
200369--200437	19	3.8	18	80	17	72	75	4	18	1	1.05
200369--200442	5	15.8	5	71	18	61	75	4	18	1	1.03
200370--200448	27	2.9	27	76	14	81	74	3	20	1	1.04
200410--200442	16	2.1	16	94	5	59	78	3	18	0	0.87
204097--204126	13	2.4	13	94	5	53	26	30	0	43	1.55
214981--215054	8	9.0	8	80	16	89	82	12	5	0	0.83
215021--215065	18	2.3	20	92	7	76	77	13	8	0	0.98
222281--222340	27	2.3	27	85	8	79	6	13	5	75	1.18
230080--230115	13	2.8	13	91	0	54	0	13	0	86	0.58
241391--241441	19	2.6	20	87	3	68	45	5	15	33	1.71
244991--245041	19	2.6	20	87	3	68	45	5	15	33	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
245448--245517	30	2.3	30	97	0	131	38	11	27	22	1.89
248172--248214	23	2.0	22	86	9	61	0	25	0	74	0.82
250620--250670	19	2.6	20	87	3	68	45	5	15	33	1.71
254629--254679	19	2.6	20	87	3	68	45	5	15	33	1.71
261620--261647	14	2.0	14	100	0	56	21	42	0	35	1.53
262309--262359	19	2.6	20	87	3	68	43	5	13	37	1.69
262525--262567	17	2.5	17	92	0	68	27	13	27	30	1.95
264306--264487	90	2.0	91	88	1	267	27	22	28	21	1.99
264669--264695	10	2.7	10	100	0	54	25	22	11	40	1.87
267830--267882	23	2.2	24	90	3	81	9	16	11	62	1.54
271453--271488	14	2.6	14	81	0	54	0	25	2	72	0.98
271475--271530	24	2.3	24	81	6	69	7	19	14	58	1.58
275448--275496	16	2.9	16	84	6	53	16	22	0	61	1.34
276495--276534	19	2.0	20	90	4	64	65	0	15	20	1.28
279399--279428	13	2.4	13	94	5	53	26	30	0	43	1.55
283626--283656	10	3.0	10	95	4	53	0	12	0	87	0.55
283623--283656	12	2.7	13	90	4	52	0	14	0	85	0.60
289700--290010	151	2.1	151	98	0	604	26	13	23	37	1.91
299968--300001	12	2.8	12	90	0	50	0	14	0	85	0.60
304544--304580	12	3.0	13	88	11	60	0	13	0	86	0.57
304544--304580	13	2.8	13	91	4	56	0	13	0	86	0.57
309118--309152	11	3.1	12	88	12	56	0	14	0	85	0.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
309118--309152	12	2.8	12	91	4	52	0	14	0	85	0.59
315848--315898	19	2.6	20	87	3	68	45	5	15	33	1.71
319451--319501	19	2.6	20	87	3	68	45	5	15	33	1.71
319908--319977	30	2.3	30	97	0	131	38	11	28	21	1.88
324913--324964	19	2.6	21	90	6	81	46	5	13	34	1.67
329013--329064	19	2.6	21	90	6	81	46	5	13	34	1.67
331010--331060	19	2.6	20	87	3	68	45	5	15	33	1.71
354781--354808	14	2.0	14	100	0	56	21	42	0	35	1.53
355470--355520	19	2.6	20	87	3	68	43	5	13	37	1.69
355686--355762	17	4.5	17	96	0	136	25	12	31	29	1.93
357502--357683	90	2.0	91	86	1	258	27	21	28	21	1.99
361044--361096	23	2.2	24	90	3	81	9	16	11	62	1.54
374347--374394	22	2.2	22	84	0	60	72	8	6	12	1.26
379791--379839	16	2.9	16	84	6	53	16	22	0	61	1.34
381280--381616	169	2.0	166	94	5	592	35	12	23	29	1.91
383860--383889	13	2.4	13	94	5	53	26	30	0	43	1.55
385386--385437	19	2.6	20	87	6	70	44	7	13	34	1.72
389488--389539	19	2.6	20	87	6	70	44	7	13	34	1.72
395039--395083	23	2.0	23	100	0	90	4	20	35	40	1.72
400368--400532	90	1.8	90	88	5	253	26	22	27	23	1.99
402396--402425	13	2.4	13	94	5	53	26	30	0	43	1.55
408406--408466	25	2.4	26	86	8	90	78	1	19	0	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
408407--408459	8	6.5	8	85	10	72	77	1	20	0	0.87
411839--411895	17	3.2	18	80	9	64	73	3	17	5	1.16
411866--411903	15	2.5	15	87	12	51	73	0	18	7	1.06
411837--411916	32	2.4	34	76	21	80	71	5	17	6	1.25
419190--419294	36	2.9	36	84	1	140	30	33	4	31	1.78
424517--424826	154	2.0	154	97	0	584	24	26	20	28	1.99
428887--429188	147	2.0	150	94	3	538	24	26	20	27	1.99
429896--430266	184	2.0	184	100	0	742	32	21	21	25	1.98
432731--432815	11	7.2	11	72	22	66	32	35	2	29	1.70
432728--432832	36	2.9	36	90	1	158	31	36	3	28	1.75

Tables:   1   2